PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_33038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 30065.4 Da PI: 10.6483 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.1 | 2.3e-23 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr+g++KKA+ELS+LC+ae+a+iifs+ +k++ + evm.TU.contig_33038.1 16 MNNESNLQVTFSKRRAGLFKKASELSTLCGAEIAIIIFSPGQKVFSF 62 689****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.249 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-33 | 7 | 74 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-26 | 7 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVRKSKGRQK VEMAKMNNES NLQVTFSKRR AGLFKKASEL STLCGAEIAI IIFSPGQKVF 60 SFGHPCVQTV LERFVSGNPP QAASGTMKLI EAHRNTSVRE LNMQLTQVLN QLEIEKKRGE 120 ELNHMKNANE NQCWWMARKN DMSLTQLQQL KASLDELKKN VAKHAEKILI RTQNNHHPHH 180 HLPHPKHAEK ILIRTQNNHH PHHHLPHPHP HHHHPNHPFF LGSSSDGASL PFETKPAGFS 240 SSIVPFNNPN MMPPKYHGFG QGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_33038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-152 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911471.1 | 1e-158 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-58 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 3e-90 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_33038.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-60 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_33038.1 |
Publications ? help Back to Top | |||
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