PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_32277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | RAV | ||||||||
Protein Properties | Length: 383aa MW: 44782.9 Da PI: 8.0361 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.3 | 5.2e-10 | 48 | 94 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ evm.TU.contig_32277.1 48 RFKGVV-PQQNGHWGAQIYA------NhQRVWLGTFKSEKEAAMAYDSAAIKLR 94 789996.566899****999......44**********99************98 PP | |||||||
2 | B3 | 86.7 | 1.9e-27 | 175 | 273 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+ltpsdv+k++rlv+pk++a ++ ++ +e++++l++ d+ r W+++++y+++s+++v+t+GW++Fvk+++Lk evm.TU.contig_32277.1 175 FQKELTPSDVSKLNRLVIPKRYAVKYfpyisdnpkhdsgENGTEQDIELVFFDKMMRPWKFRYCYWRSSQSFVFTRGWNRFVKEKNLK 262 99*****************************999999986666799****************************************** PP TT-EEEEEE-S CS B3 76 egDfvvFkldg 86 e+D+++F+ + evm.TU.contig_32277.1 263 EKDVIIFYTCD 273 *******9543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.23E-21 | 47 | 105 | No hit | No description |
SMART | SM00380 | 1.7E-19 | 48 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-14 | 48 | 104 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.647 | 48 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-15 | 48 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-5 | 48 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-32 | 168 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-26 | 173 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-23 | 174 | 270 | No hit | No description |
PROSITE profile | PS50863 | 12.21 | 175 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-24 | 175 | 274 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-18 | 175 | 285 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVEEMSSNAR TNLTLMETSS SNNSENCTLS IRPSKRARQD NEATCSTRFK GVVPQQNGHW 60 GAQIYANHQR VWLGTFKSEK EAAMAYDSAA IKLRSGDSHR NLPWTDLNVQ EPDFQNLYTP 120 KAILNMIRDG SYQSKFSDFL RIQSDQISFD HHQDTMINKI TIHDHHRQIS CVQLFQKELT 180 PSDVSKLNRL VIPKRYAVKY FPYISDNPKH DSGENGTEQD IELVFFDKMM RPWKFRYCYW 240 RSSQSFVFTR GWNRFVKEKN LKEKDVIIFY TCDHQSQDDH GVNTSSGQNT FFLIDVKHHH 300 YHHHYNHHSS TSEKVDLGVK SYDELKLELN LEKNFSFKLG DNHNQDDHNH DHRTKRLKEE 360 RLESTRDLIG DKGFTLFGVK IS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-26 | 174 | 277 | 13 | 108 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_32277.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911529.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 1e-114 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A067EMN2 | 1e-128 | A0A067EMN2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PC55 | 1e-128 | A0A2H5PC55_CITUN; Uncharacterized protein | ||||
STRING | evm.TU.contig_32277.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 | Representative plant | OGRP10227 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-113 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_32277.1 |