PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_32277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family RAV
Protein Properties Length: 383aa    MW: 44782.9 Da    PI: 8.0361
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_32277.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35.2e-104894254
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                           ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  evm.TU.contig_32277.1 48 RFKGVV-PQQNGHWGAQIYA------NhQRVWLGTFKSEKEAAMAYDSAAIKLR 94
                           789996.566899****999......44**********99************98 PP

2B386.71.9e-27175273186
                            EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                            f+k+ltpsdv+k++rlv+pk++a ++             ++ +e++++l++ d+  r W+++++y+++s+++v+t+GW++Fvk+++Lk
  evm.TU.contig_32277.1 175 FQKELTPSDVSKLNRLVIPKRYAVKYfpyisdnpkhdsgENGTEQDIELVFFDKMMRPWKFRYCYWRSSQSFVFTRGWNRFVKEKNLK 262
                            99*****************************999999986666799****************************************** PP

                            TT-EEEEEE-S CS
                     B3  76 egDfvvFkldg 86 
                            e+D+++F+  +
  evm.TU.contig_32277.1 263 EKDVIIFYTCD 273
                            *******9543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-2147105No hitNo description
SMARTSM003801.7E-1948109IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1448104IPR016177DNA-binding domain
PROSITE profilePS5103216.64748103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1548103IPR001471AP2/ERF domain
PfamPF008471.6E-54894IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.1E-32168275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-26173272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-23174270No hitNo description
PROSITE profilePS5086312.21175288IPR003340B3 DNA binding domain
PfamPF023622.1E-24175274IPR003340B3 DNA binding domain
SMARTSM010191.2E-18175285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVEEMSSNAR TNLTLMETSS SNNSENCTLS IRPSKRARQD NEATCSTRFK GVVPQQNGHW  60
GAQIYANHQR VWLGTFKSEK EAAMAYDSAA IKLRSGDSHR NLPWTDLNVQ EPDFQNLYTP  120
KAILNMIRDG SYQSKFSDFL RIQSDQISFD HHQDTMINKI TIHDHHRQIS CVQLFQKELT  180
PSDVSKLNRL VIPKRYAVKY FPYISDNPKH DSGENGTEQD IELVFFDKMM RPWKFRYCYW  240
RSSQSFVFTR GWNRFVKEKN LKEKDVIIFY TCDHQSQDDH GVNTSSGQNT FFLIDVKHHH  300
YHHHYNHHSS TSEKVDLGVK SYDELKLELN LEKNFSFKLG DNHNQDDHNH DHRTKRLKEE  360
RLESTRDLIG DKGFTLFGVK IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2617427713108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_32277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911529.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-114RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A067EMN21e-128A0A067EMN2_CITSI; Uncharacterized protein
TrEMBLA0A2H5PC551e-128A0A2H5PC55_CITUN; Uncharacterized protein
STRINGevm.TU.contig_32277.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-113RAV family protein