PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_32256.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 40131.4 Da PI: 5.8232 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.2 | 1.9e-29 | 127 | 187 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ gs+fpr+YYrCt++ gC ++k+v+rs++dp+v+e+tY+g+H+++ evm.TU.contig_32256.1 127 EDGYCWRKYGQKDILGSNFPRGYYRCTHRhteGCLATKQVQRSDSDPTVFEVTYRGRHTCN 187 8***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 8.76E-25 | 126 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-41 | 126 | 188 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-26 | 126 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.066 | 127 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 127 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEKGMEMEQR SLVNELKQGK ELAKQLRNHL NPSSSEETRQ FLVEKILSSY EKALSLLNWA 60 PLVLETQPPA VNPTLGSPQS SFANTSPRSD GSNLEWKDQC SKGAHKKRKT SPRWTEQVKV 120 CLGVGAEDGY CWRKYGQKDI LGSNFPRGYY RCTHRHTEGC LATKQVQRSD SDPTVFEVTY 180 RGRHTCNTRS SNLTMATTNQ VSKENKDNRQ EQQQLLQQQE LSFNFGSNFK VKTEDLDMRD 240 EIFPSFSFHV ESENVNNNDI FWESNFMESF SSTFLPPTTS ESNHFSASPC HMTNYRLGQI 300 VQSSESDLTA EIISAPTSVT NSPMEDFGLS SLDMEFPFDN VHEIFSCHGG ERN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-20 | 128 | 184 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 7e-20 | 128 | 184 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_32256.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911532.1 | 0.0 | probable WRKY transcription factor 46 | ||||
TrEMBL | G3FF79 | 1e-132 | G3FF79_9ROSI; WRKY transcription factor 6-1 | ||||
STRING | evm.TU.contig_32256.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 9e-50 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_32256.1 |