PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_31965.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 97aa    MW: 10675.8 Da    PI: 10.792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_31965.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-21750346
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           i+  +n qvtf+kR +gi+KKA+E+S+LC++e+aviifs+  kl
  evm.TU.contig_31965.2  7 IKKATNLQVTFAKRWAGIFKKASEISTLCGVEIAVIIFSPAKKL 50
                           8999************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.278150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18260IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-17256IPR002100Transcription factor, MADS-box
PfamPF003196.8E-21650IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-71934IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-73455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MVEMVKIKKA TNLQVTFAKR WAGIFKKASE ISTLCGVEIA VIIFSPAKKL INRFSGLIEQ  60
PLSANRCMMD AHRNACLQGL NSQLNKLNAQ LDAKKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_31965.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386371e-61AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909162.15e-53agamous-like MADS-box protein AGL62
TrEMBLA0A067L1452e-23A0A067L145_JATCU; Uncharacterized protein
STRINGevm.TU.contig_31965.23e-64(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-23AGAMOUS-like 62