PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_31756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARF | ||||||||
Protein Properties | Length: 620aa MW: 68982.1 Da PI: 7.3028 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.2e-23 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++ +++a+e+ + ++ +++l +d++g++W +++i+r++++r++l++GW+ Fv++++L +gD ++F evm.TU.contig_31756.1 161 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELAAKDLHGNVWHFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 247 99*****************************73.3334459*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 + +++el+v+v+r+ evm.TU.contig_31756.1 248 L--RGENGELRVGVRRA 262 *..449999*****996 PP | |||||||
2 | Auxin_resp | 121.6 | 5.6e-40 | 287 | 369 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk evm.TU.contig_31756.1 287 AWHAISTGTMFTVYYKPRTSPAEFIVPYDQYMESVKNSYAIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRESKWRCLK 369 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-41 | 156 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-40 | 156 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-21 | 159 | 261 | No hit | No description |
PROSITE profile | PS50863 | 11.575 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-21 | 161 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-37 | 287 | 369 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MGSSEVSIKE NSVHGRGESF SSGYSEPNHG RNTMEGQNGH STTSNASRVD PEAALYTELW 60 HACAGPLVTV PRERERVFYF PQGHIEQVEA STNQVADQKM PVYNLPSKIL CRVINVQLKA 120 EPDTDEVFAQ VTLLPEPNQD ENAVDKEPSP PQPPRFHVHS FCKTLTASDT STHGGFSVLR 180 RHADECLPPL DMSRQPPTQE LAAKDLHGNV WHFRHIFRGQ PRRHLLQSGW SVFVSSKRLV 240 AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA ISTGTMFTVY 300 YKPRTSPAEF IVPYDQYMES VKNSYAIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW 360 RESKWRCLKV RWDETSTIPR PERVSPWKIE PALAPPALNP LPMPRSKRPR PNMLPSSPDS 420 SVLTREGSSK VTVDPSPASG YSRVLQGQEF STLKGNFAES NESDTAEKSV VWQPSIDDDK 480 VDVVSASRRY GSESWMPTGR HEPTYTDLLS GFGANADLTH GHCSSFADQA VATMNPIKKH 540 LLDQEGKFNL LPSPWSLMSS GLSLKLAESS SNVPKQGVDA SYPSRGNIRH GGYGEYPMLH 600 GHRVEHSHGS WMMPPPPPSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 406 | 410 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_31756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911560.1 | 0.0 | auxin response factor 2, partial | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A1R3JIL0 | 0.0 | A0A1R3JIL0_COCAP; Auxin response factor | ||||
STRING | evm.TU.contig_31756.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_31756.1 |