PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_31285.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 272aa    MW: 30239.2 Da    PI: 9.5629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_31285.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.6e-211864349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           i+  +n qvtf+kRr+ i+KKA+E+S+LC+ae+aviifs+  k++ +
  evm.TU.contig_31285.2 18 IKKATNLQVTFAKRRASIFKKASEISTLCGAEIAVIIFSPAKKVFFF 64
                           8999*************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-25867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.385868IPR002100Transcription factor, MADS-box
CDDcd002652.60E-30976No hitNo description
SuperFamilySSF554554.06E-24984IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-161030IPR002100Transcription factor, MADS-box
PfamPF003193.5E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEPPRKLKGR QMVEMVKIKK ATNLQVTFAK RRASIFKKAS EISTLCGAEI AVIIFSPAKK  60
VFFFVSPSVE KLINRFSGLI EQPLSANRCM MDAHRNACLQ GLNSQLNKQF QPALEELYEN  120
VIKVAKEKDA EEDNINPNSD DQLFLGSSSN GTGLPFESIP LNAIVGPRNM VNPNMNRVNS  180
NMVNPNVIRP SMINPNMVNP AAYMKMLRDM LNNNNPNIPL SNSMTPNNPI MVSNVMLINS  240
NPTNMMLPAA NMMINNDQNM VPADHMMMNN D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_31285.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386371e-170AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911602.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_31285.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62