PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_31285.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 378aa    MW: 41852 Da    PI: 4.3495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_31285.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.2e-162064246
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           + en+   qvtfsk r  ++KKA+EL++LC  +v +iifs+ ++ 
  evm.TU.contig_31285.1 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIIFSPGNRA 64
                           6799999*********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-201170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.5491171IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-141333IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-211393IPR002100Transcription factor, MADS-box
PfamPF003192.3E-182067IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-143348IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-144869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MADEGTSSKS KSRQKIESKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIIFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRPARDP HNDNDTQQII SRIIEAQDKE EAARKRGKEL  120
KQRRKGLMKE LWYMHSMDKF NLEELEVLDA GMKALWNDVV ELTKKLKKEQ GNSSSAEGSP  180
RDDEMFYSDP AMKGLTTFPM PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN  240
PLNDSSMALD PVDDLKAMPR DLFNNLVMIE SDDPIASLNA GDNPDIICDA FGNQIATMDI  300
NLSNDPNIGL NELFNPSTMP HAPNDPISTT SDALNMIRIV PNDSNLDSVF DGFTLEMLFA  360
DPLDDENFIV DNPNGGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_31285.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_31285.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31AGAMOUS-like 62