PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_29561.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 248aa    MW: 28476.7 Da    PI: 4.5974
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_29561.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.51.5e-5461331128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+t
  evm.TU.contig_29561.1   6 LPPGFRFHPTDEELVNYYLKRKINGLEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKST 92 
                            79****************************.99**************84335556888****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++v+s +++ +g+kktLv+y+grap+g +tdWvmheyrl
  evm.TU.contig_29561.1  93 GKDRRVTS-QNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133
                            ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-644157IPR003441NAC domain
PROSITE profilePS5100560.0356156IPR003441NAC domain
PfamPF023655.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING LEIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTS QNRPIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKDCED TSGIQDSYAL CRVFKKNGIC SDTEDQQQAQ CSLLMMDSPQ  180
GVINNNNNSN IEYETTSPDV PIASSSYIDE DDKDDSWMQF ITDDAWCSSS TGLMGVEEVS  240
QHVAFTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-54115712166NO APICAL MERISTEM PROTEIN
1ut4_B3e-54115712166NO APICAL MERISTEM PROTEIN
1ut7_A3e-54115712166NO APICAL MERISTEM PROTEIN
1ut7_B3e-54115712166NO APICAL MERISTEM PROTEIN
3swm_A4e-54115715169NAC domain-containing protein 19
3swm_B4e-54115715169NAC domain-containing protein 19
3swm_C4e-54115715169NAC domain-containing protein 19
3swm_D4e-54115715169NAC domain-containing protein 19
3swp_A4e-54115715169NAC domain-containing protein 19
3swp_B4e-54115715169NAC domain-containing protein 19
3swp_C4e-54115715169NAC domain-containing protein 19
3swp_D4e-54115715169NAC domain-containing protein 19
4dul_A3e-54115712166NAC domain-containing protein 19
4dul_B3e-54115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_29561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911747.10.0NAC domain-containing protein 86
SwissprotQ9FFI59e-91NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A068TRH51e-149A0A068TRH5_COFCA; Uncharacterized protein
STRINGevm.TU.contig_29561.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-134NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]