PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_28309.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 376aa    MW: 41771.9 Da    PI: 6.5088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_28309.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-191461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl
  evm.TU.contig_28309.2 14 KGPWTAEEDAKILAYVSKHGTGNWTSVPKKAGLRRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding44.53.6e-1469110346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            ++T++E+el+v++++  G++ W+ Ia+ +  gRt++++k++w++
  evm.TU.contig_28309.2  69 SFTPQEEELIVNLHAAIGSR-WSIIAQQLS-GRTDNDVKNYWNT 110
                            79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129427.166965IPR017930Myb domain
SuperFamilySSF466891.65E-3011108IPR009057Homeodomain-like
SMARTSM007177.7E-161363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
CDDcd001674.38E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2365116IPR009057Homeodomain-like
SMARTSM007171.4E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.52666116IPR017930Myb domain
PfamPF002492.2E-1269110IPR001005SANT/Myb domain
CDDcd001678.47E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVRPPCCDKL NVKKGPWTAE EDAKILAYVS KHGTGNWTSV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEELIVN LHAAIGSRWS IIAQQLSGRT DNDVKNYWNT KLKKKLTDMG  120
IDPVTHKPFS QILADYGNIG GLQKPSPATR LISSLNTDLN KNVNFNMTKS HENYKYPFSN  180
INPNILKTRN LLLSPKPEPV MENQHTNSTH LLSQLHAINL VTQVSGWTPN HETITSSSSS  240
SSSSTCSTAG QEKSTAVGFS WSDFLLDDEL LRAPDHQREG ELQGEELLME LSSMELVSEK  300
NHVMPAKISH GNVESCGEMI SDNGEVEGKE KTTGVNEKFH GSSSVDHQSF VEAMLDGEND  360
MYLLFPDLSD GPFCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_28309.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911845.10.0transcription factor MYB35-like
TrEMBLA0A2I4EJM11e-122A0A2I4EJM1_JUGRE; transcription factor MYB35-like
STRINGevm.TU.contig_28309.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-73MYB family protein