PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_28241.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28141.2 Da    PI: 10.5493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_28241.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.6e-231662349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +n+sn qvtfskRr g++KKA+ELS+LC+ae+a+iifs+ +k++ +
  evm.TU.contig_28241.1 16 MNNESNLQVTFSKRRVGLFKKASELSTLCGAEIAIIIFSPGQKVFSF 62
                           689****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.983666IPR002100Transcription factor, MADS-box
CDDcd002655.42E-33774No hitNo description
SuperFamilySSF554551.01E-25789IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-19828IPR002100Transcription factor, MADS-box
PfamPF003197.0E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARKSKGRQK VEMAKMNNES NLQVTFSKRR VGLFKKASEL STLCGAEIAI IIFSPGQKVF  60
SFGHPCVQTV LERFVSGNPP QAASGTMKLI EAHRNTSVRE LNMQLTQVLN QLEIEKKRGE  120
ELNHMKNANE NQCWWMARKN DMSLTQLQQL KASLDELKKN VAKHAEKILI RTQNNHHPHH  180
HLPHPHPHFP HPHPHHHHPN HPFFLGSSSD GASLPFETKP AGFSSSIVPF NNPNMMPPKY  240
HGFGQGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-18792186Myocyte-specific enhancer factor 2A
3kov_B3e-18792186Myocyte-specific enhancer factor 2A
3kov_I3e-18792186Myocyte-specific enhancer factor 2A
3kov_J3e-18792186Myocyte-specific enhancer factor 2A
3p57_A3e-18792186Myocyte-specific enhancer factor 2A
3p57_B3e-18792186Myocyte-specific enhancer factor 2A
3p57_C3e-18792186Myocyte-specific enhancer factor 2A
3p57_D3e-18792186Myocyte-specific enhancer factor 2A
3p57_I3e-18792186Myocyte-specific enhancer factor 2A
3p57_J3e-18792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_28241.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386370.0AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911471.11e-153agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ41e-92A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.TU.contig_28241.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-59AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]