PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_28237.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 331aa MW: 35928.2 Da PI: 8.8944

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_28237.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	45	105	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ evm.TU.contig_28237.1 45 EQAALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 105 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	43	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-34	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLGKCEKMPV ISSTTNQWSQ GHNQIDEKSL MASTARLMEK PCQQEQAALK CPRCDSSNTK 60 FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRSPAM DAPSSNPNKP 120 NHSQMNNNNN SSASSNPINP LFYGLPTNPS DPINLPFPRS VSTTSGYGLQ SQLNALGLGT 180 MNIMSHDAAV SDHNPLIINT TKQLQDMAVT SSSFLSTYPI FANSSPSSTP TISSLLASTL 240 HQQQKLINGT QPPNHFQSLA SLQDLQMGGG NSTELTGVVK GENGQEQSKM EWNQIDQVGL 300 SDPNSLYWNT TGLSAWHDPA NIGSSVTSLI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_28237.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911851.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A061GGE9	1e-119	A0A061GGE9_THECC; F-box family protein, putative
STRING	evm.TU.contig_28237.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_28237.1