PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_27928.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 321aa    MW: 36926 Da    PI: 10.0604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_27928.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-17954147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ed++l ++vk +G+++W+ Ia++++ gR++k+c++rw++ 
  evm.TU.contig_27928.1  9 RGHWRPAEDDRLRQLVKDFGPKNWNFIAQHLQ-GRSGKSCRLRWYNQ 54
                           899*****************************.************96 PP
2Myb_DNA-binding49.41e-1562105247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++T+ E+e l++a++  G++ W++Iar ++ gRt++ +k++++ +
  evm.TU.contig_27928.1  62 RPFTEKEEETLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHYHVV 105
                            68*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.481459IPR017930Myb domain
SMARTSM007173.5E-15857IPR001005SANT/Myb domain
SuperFamilySSF466898.98E-288102IPR009057Homeodomain-like
PfamPF002491.4E-16955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-251062IPR009057Homeodomain-like
CDDcd001674.95E-141253No hitNo description
SMARTSM007175.4E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129418.42160110IPR017930Myb domain
PfamPF002494.5E-1361104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-1963108IPR009057Homeodomain-like
CDDcd001672.32E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMTTKSCQRG HWRPAEDDRL RQLVKDFGPK NWNFIAQHLQ GRSGKSCRLR WYNQLDPNIN  60
KRPFTEKEEE TLLKAHRIQG NRWASIARLF PGRTDNAVKN HYHVVMARRK REKFSCYGKR  120
SCHFNPPSSN TTTTITATPN SSVQTYLSNF RPFDPQSKHD IHLFNSNKNN FISSNFLYSS  180
PATTSNDSPT SNWTHSGSTV TCSAHHNNSL IGFDVLRGSM TTPSSSSHHH HYHHHQKLVH  240
GSDRILPFSN YPSLFATKPA VAPPHHHHRF FSNRVESEEI WRRKQHLQTV GEQDDCREDD  300
ESNKVNKDVD FIDFLGVGIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-3491097107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112RRKREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_27928.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888615.10.0transcription factor MYB117
STRINGevm.TU.contig_27928.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-70myb domain protein 69