PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_26687.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 310aa MW: 34485.3 Da PI: 5.1177 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.6e-10 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ qvtfsk r ++KK +E ++L +v +i+fs+ ++ evm.TU.contig_26687.2 20 KMENEASLQVTFSKHRSSLFKKVSEPCTLYRQDVGLIVFSPGNRA 64 6799999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.801 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-14 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-17 | 12 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-11 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-13 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-11 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-11 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MADEGTSSKN KGRQKIESKK MENEASLQVT FSKHRSSLFK KVSEPCTLYR QDVGLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPIKIL TTTMILNKQS AQDKEEAARK RGKELKQRRK 120 GLMKELWYTH SMDKFSLEEL EVLDAGMKAL WNDVAELAKK LKMEQGNSSS AEGSPRDDRM 180 FYSDPAMKAL ITLPMPSMPS NPTHEYAPSS TNSTPPLSRF CNLDSGNPTI MMMDNSLSDS 240 SMVLDPVDDL KAMPRDLFNN LVMIEDLFAD PLDDENFIVD NPNEAANGDN LKTMSPPLVG 300 NILGSGQGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_26687.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 1e-163 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.TU.contig_26687.2 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-27 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_26687.2 |