PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_26687.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 272aa    MW: 30277.2 Da    PI: 9.5788
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_26687.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-191864349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           i+  +n qvtf+kRr+ i+ KA+E+S+LC+ae+aviifs+  k++ +
  evm.TU.contig_26687.1 18 IKKATNLQVTFAKRRASIFRKASEISTLCGAEIAVIIFSPVKKVFFF 64
                           8999************************************9998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.965868IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-22867IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-23984IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-151030IPR002100Transcription factor, MADS-box
PfamPF003191.5E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEPPRKLKGR QMVEMVKIKK ATNLQVTFAK RRASIFRKAS EISTLCGAEI AVIIFSPVKK  60
VFFFVSPSVE KLINRFSGLI EQPLSANRCM MDAHRNACLQ GLNSQLNKQF QPALEELYEN  120
VIKVAKEKDA EEDNINPNSD DQLFLGSSSN GTGLPFESIP LNAIVGPRNM VNPNMNRVNS  180
NMVNPNVIRP SMINPNMVNP AAYMKMLRDM LNNNNPNIPL SNSMTPNNPI MVSNVMLINS  240
NPTNMMLPAA NLMINNDQNM VPADHMMMNN D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_26687.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386371e-172AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911940.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_26687.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-17AGAMOUS-like 62