PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_24748.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 398aa MW: 43974.4 Da PI: 4.3169 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42 | 1.2e-13 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ qvt+sk r ++KK +EL++LC +v +i+fs+ ++ evm.TU.contig_24748.2 20 KMENEASLQVTLSKHRSSLFKKVSELCTLCRPDVGLIVFSPGNRA 64 6799999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-18 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.993 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-19 | 12 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-13 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-16 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-13 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-13 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEDEGTSSKS KGRQKIESKK MENEASLQVT LSKHRSSLFK KVSELCTLCR PDVGLIVFSP 60 GNRAFCYGNR NIDIVIDRFL SIDVRPTRDP DNENDTQQII SRITEAQDKE EAARKRGKEL 120 KQRRKGLMKE LWYTRSMDKF NLEELEVLDA CMKALWNDVA ELAKKEQGNS SSAEGSPRDD 180 GMFYSDPAMK ALTTLPMPSM PSNPTHEYAP SSTNSTPPLS SFCNLDSGKP NIMMMDNPLN 240 DSSMALDPVD DLKAMPRDLF NNLVMIESDD PIAALNVGDN PDIMSNAFRN QIATMDINLS 300 NDPNIGPNEF FNPSTMSHAP NDPISTTSDA LNMIRIVPDD SNLDSVFDGF TLEMLFADPL 360 DDENFIVDNL NEAVNGDNPK TMPPPLAGNV LGSGQGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_24748.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.TU.contig_24748.2 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_24748.2 |