PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.9.427.1 | ||||||||
Common Name | CHLNCDRAFT_17960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 57aa MW: 6909.98 Da PI: 11.6614 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 84.9 | 9.9e-27 | 1 | 57 | 19 | 75 |
HHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 19 rrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +r++vC+ h ++p+++v+g+ qrfCqqC+rfh l+efD +kr Cr rL++hn+rrrk gw1.9.427.1 1 QRYRVCKPHLQSPAMVVDGVVQRFCQQCGRFHLLREFDGDKRNCRARLQQHNSRRRK 57 69******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 22.298 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.2E-21 | 1 | 45 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-23 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-24 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
QRYRVCKPHL QSPAMVVDGV VQRFCQQCGR FHLLREFDGD KRNCRARLQQ HNSRRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-16 | 2 | 57 | 29 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005847991.1 | 1e-34 | hypothetical protein CHLNCDRAFT_17960, partial | ||||
Swissprot | Q9SMX9 | 7e-19 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2P6TDT6 | 6e-32 | A0A2P6TDT6_CHLSO; Receptor of activated kinase C component of 40S small ribosomal subunit isoform A | ||||
TrEMBL | A0A2P6TDV2 | 6e-32 | A0A2P6TDV2_CHLSO; Receptor of activated kinase C component of 40S small ribosomal subunit isoform C | ||||
TrEMBL | A0A2P6TDV5 | 6e-32 | A0A2P6TDV5_CHLSO; Receptor of activated kinase C component of 40S small ribosomal subunit isoform B | ||||
TrEMBL | E1ZDN0 | 2e-33 | E1ZDN0_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005847991.1 | 4e-34 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 3e-21 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 17355400 |
Publications ? help Back to Top | |||
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