PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.29.136.1 | ||||||||
Common Name | CHLNCDRAFT_13521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | LSD | ||||||||
Protein Properties | Length: 164aa MW: 16952 Da PI: 7.1322 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.3 | 4.6e-12 | 4 | 28 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP+GA +VRCa C tV gw1.29.136.1 4 CAGCRTVLLYPAGAQNVRCARCSTV 28 ***********************98 PP | |||||||
2 | zf-LSD1 | 31.8 | 2.4e-10 | 45 | 69 | 1 | 23 |
zf-LSD1 1 Cg..gCrtlLsYPrGApsVRCalCd 23 C+ +Cr++L+YPrGA +V+C++C gw1.29.136.1 45 CSnaQCRVVLMYPRGAGAVQCSVCG 69 55669*******************6 PP | |||||||
3 | zf-LSD1 | 41 | 3.2e-13 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+++L+Y +GA sV+Ca+C++V gw1.29.136.1 85 CGGCQVTLAYAYGAQSVKCAVCNFV 109 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.9E-13 | 1 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-10 | 4 | 28 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.9E-6 | 43 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.7E-10 | 45 | 70 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 9.1E-4 | 63 | 112 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 6.8E-10 | 82 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-11 | 85 | 109 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
QIVCAGCRTV LLYPAGAQNV RCARCSTVTA VAPPTPAADM AQLCCSNAQC RVVLMYPRGA 60 GAVQCSVCGN ISDASQANQL GHVVCGGCQV TLAYAYGAQS VKCAVCNFVT PVSAHLGGTS 120 TAAQQQPQQQ SAQQQGQQQQ QQQHQAATVV VENPATQDEQ GNEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005843568.1 | 1e-111 | hypothetical protein CHLNCDRAFT_13521, partial | ||||
TrEMBL | E1ZRS9 | 1e-110 | E1ZRS9_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005843568.1 | 1e-110 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 7e-31 | lsd one like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 17350959 |
Publications ? help Back to Top | |||
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