PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.24.267.1 | ||||||||
Common Name | CHLNCDRAFT_15492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | HSF | ||||||||
Protein Properties | Length: 93aa MW: 11056.5 Da PI: 8.9936 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.7 | 1.8e-33 | 3 | 93 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++++ + +isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll +i+ gw1.24.267.1 3 FLTKTYELVDEAISDPIISWGADGQSFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFLRGRRDLLGDIH 90 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k gw1.24.267.1 91 RRK 93 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 8.03E-34 | 1 | 92 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-36 | 1 | 92 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.6E-56 | 1 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 3 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 3 | 26 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 41 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 42 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
PPFLTKTYEL VDEAISDPII SWGADGQSFV VWKPAEFARD LLPLHFKHNN FSSFVRQLNT 60 YGFRKVDPDR WEFANEYFLR GRRDLLGDIH RRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 4e-25 | 1 | 92 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 4e-25 | 1 | 92 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005844236.1 | 9e-64 | hypothetical protein CHLNCDRAFT_15492, partial | ||||
Swissprot | Q6Z9C8 | 2e-45 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | E1ZPW2 | 2e-62 | E1ZPW2_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005844236.1 | 3e-63 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-47 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Entrez Gene | 17351514 |
Publications ? help Back to Top | |||
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