PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.16.195.1 | ||||||||
Common Name | CHLNCDRAFT_14092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 78aa MW: 8517.12 Da PI: 9.3023 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.8e-06 | 58 | 75 | 4 | 22 |
---SGGGGTS--TTTTT-S CS zf-CCCH 4 elCrffartGtCkyGdrCk 22 + C++f+r G+C+ G+ C+ gw1.16.195.1 58 PVCKRFLR-GYCPAGAACP 75 78******.*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.197 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.99 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 27 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.906 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.87E-5 | 46 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.925 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.36 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 58 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043484 | Biological Process | regulation of RNA splicing | ||||
GO:0060149 | Biological Process | negative regulation of posttranscriptional gene silencing | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
KRAVCPHWLH GRCTAGALCT LQHQRKAELM PICTHFLQGR CTAAACPYLH VNLPAGAPVC 60 KRFLRGYCPA GAACPHKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6eoj_B | 2e-12 | 2 | 78 | 64 | 142 | mRNA 3'-end-processing protein YTH1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005845769.1 | 3e-50 | hypothetical protein CHLNCDRAFT_14092, partial | ||||
TrEMBL | E1ZKC5 | 6e-49 | E1ZKC5_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005845769.1 | 1e-49 | (Chlorella variabilis) |
Link Out ? help Back to Top | |
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Entrez Gene | 17353241 |
Publications ? help Back to Top | |||
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