PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.12.608.1

Common Name

CHLNCDRAFT_17734

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 93aa MW: 10774.3 Da PI: 5.2518

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.12.608.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.2	6.7e-55	1	93	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrflPian+srimkk lP+naki+kdaketvqec sefisf+tseasdkcqre+rktingddllwa++tlGf++yveplk yl+k+re+e gw1.12.608.1 1 REQDRFLPIANISRIMKKSLPGNAKIAKDAKETVQECLSEFISFITSEASDKCQRERRKTINGDDLLWAMTTLGFDEYVEPLKEYLAKFREAE 93 79****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-52	1	93	IPR009072	Histone-fold
SuperFamily	SSF47113	9.47E-39	3	92	IPR009072	Histone-fold
Pfam	PF00808	1.6E-28	6	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-21	34	52	No hit	No description
PRINTS	PR00615	1.7E-21	53	71	No hit	No description
PRINTS	PR00615	1.7E-21	72	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
REQDRFLPIA NISRIMKKSL PGNAKIAKDA KETVQECLSE FISFITSEAS DKCQRERRKT 60 INGDDLLWAM TTLGFDEYVE PLKEYLAKFR EAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	4e-47	1	91	3	93	NF-YB
4awl_B	4e-47	1	91	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	4e-47	1	91	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357982	4e-67	AK357982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066F22.
GenBank	AK364176	4e-67	AK364176.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G14.
GenBank	AK367478	4e-67	AK367478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057P16.
GenBank	AK370727	4e-67	AK370727.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116A18.
GenBank	BT009078	4e-67	BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBank	GU902786	4e-67	GU902786.1 Triticum monococcum nuclear transcription factor Y subunit B2 mRNA, partial cds.
GenBank	JF764604	4e-67	JF764604.1 Hordeum vulgare NF-YB5 mRNA, complete cds.
GenBank	KM078735	4e-67	KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBank	KM078736	4e-67	KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBank	KM078737	4e-67	KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847098.1	2e-63	transcription factor, partial
Swissprot	O23310	7e-57	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
Swissprot	Q75IZ7	2e-56	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	E1ZGU1	5e-62	E1ZGU1_CHLVA; Transcription factor (Fragment)
STRING	XP_005847098.1	8e-63	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2023	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-59	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Entrez Gene	17354234

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]