PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh3_pg.C_scaffold_9000028 | ||||||||
Common Name | CHLNCDRAFT_52003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | NF-YC | ||||||||
Protein Properties | Length: 114aa MW: 11330.8 Da PI: 4.3441 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 49.8 | 7.4e-16 | 25 | 103 | 22 | 99 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivprd 99 + r+k+++k d ++k is+ea ++ka elf+ l+ ++ h + + r +l+ +d+aa+v++++ dfl d+vp+ fgenesh3_pg.C_scaffold_9000028 25 TVNRVKNLVKEDAEIKSISTEACFAVAKATELFLEGLASKAAAHMQAAGRAdSLEYADVAAVVAESEALDFLGDVVPQT 103 578*******************************************9999538***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.9E-20 | 26 | 102 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.3E-8 | 27 | 74 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.37E-15 | 33 | 103 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MDASPAGSEG AASPGSKGPT ALIITVNRVK NLVKEDAEIK SISTEACFAV AKATELFLEG 60 LASKAAAHMQ AAGRADSLEY ADVAAVVAES EALDFLGDVV PQTVKAAALL ASA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005848052.1 | 1e-73 | hypothetical protein CHLNCDRAFT_52003 | ||||
TrEMBL | E1ZE11 | 3e-72 | E1ZE11_CHLVA; Uncharacterized protein | ||||
STRING | XP_005848052.1 | 4e-73 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10859 | 3 | 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17355460 |
Publications ? help Back to Top | |||
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