PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_6000074

Common Name

CHLNCDRAFT_51260

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 612aa MW: 65511.1 Da PI: 10.4015

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_6000074	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	56.2	9e-18	192	265	4	76
STT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 v+gCe+ l+++++++ r ++Ce h+++++v +g rfCqqC++ + fD ++rsCr+ Lak +r ++ fgenesh3_pg.C_scaffold_6000074 192 VHGCEVVLNNLRSFFLRQRICEEHARSEAVPdGRGGLARFCQQCTKLEPVAAFDGRRRSCRTSLAKRHKRLNRA 265 89************************998357889**************************988886654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	15.999	187	265	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.3E-16	191	252	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-15	191	266	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-21	192	263	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MAQEEQQTAA RSQQTQAASQ PSTPQRPPTL FEAVRQIEPM TDRILRWLPE WVRDVVQDRR 60 KNLLYLERHM QRRLINEFRA QARELEPVLK SRGQMVGETI LEVFTSSTGT DVTYAEVVAG 120 SLPDTVSGKL PRDLITVIDP LITPFIDPFV GKQPLLQPRR LAAPRGLPEG IKVPINEKAA 180 EIKTTVVHSF AVHGCEVVLN NLRSFFLRQR ICEEHARSEA VPDGRGGLAR FCQQCTKLEP 240 VAAFDGRRRS CRTSLAKRHK RLNRARAEQP GTSTDTHTSS ADGRGSTSSP QGADGRLGGR 300 GQRADGASSP ATHTSFQLAG AKRSCGTTTS PTQPTAAALA GAGQAPRLPP GDLIPGRQPY 360 AELAGPGMPG LQAPAGALGE GGEAALLQQL AQFLGMPGAL GAAAASGGAA GSQELQLELP 420 GSVTELRSLL GALRQLQAII GSVAIPQVQR ALTRLEAADV LGLLLAMQAQ RPQEQQAGGI 480 ATPQPQQDAA LGGQELAAVL QLLQSHVQPP QALPQQQQKQ QQRRQQQQHQ QQQQQHLMQQ 540 ARQQPQQHQP QQPHGQPPAA AAGGFPALPV PAGSNPPPRQ QQPPLAGDSS SAVMHAFFQQ 600 LQQAAQQPPK P*

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MAQEEQQTAA RSQQTQAASQ PSTPQRPPTL FEAVRQIEPM TDRILRWLPE WVRDVVQDRR  60
KNLLYLERHM QRRLINEFRA QARELEPVLK SRGQMVGETI LEVFTSSTGT DVTYAEVVAG  120
SLPDTVSGKL PRDLITVIDP LITPFIDPFV GKQPLLQPRR LAAPRGLPEG IKVPINEKAA  180
EIKTTVVHSF AVHGCEVVLN NLRSFFLRQR ICEEHARSEA VPDGRGGLAR FCQQCTKLEP  240
VAAFDGRRRS CRTSLAKRHK RLNRARAEQP GTSTDTHTSS ADGRGSTSSP QGADGRLGGR  300
GQRADGASSP ATHTSFQLAG AKRSCGTTTS PTQPTAAALA GAGQAPRLPP GDLIPGRQPY  360
AELAGPGMPG LQAPAGALGE GGEAALLQQL AQFLGMPGAL GAAAASGGAA GSQELQLELP  420
GSVTELRSLL GALRQLQAII GSVAIPQVQR ALTRLEAADV LGLLLAMQAQ RPQEQQAGGI  480
ATPQPQQDAA LGGQELAAVL QLLQSHVQPP QALPQQQQKQ QQRRQQQQHQ QQQQQHLMQQ  540
ARQQPQQHQP QQPHGQPPAA AAGGFPALPV PAGSNPPPRQ QQPPLAGDSS SAVMHAFFQQ  600
LQQAAQQPPK P*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849086.1	0.0	hypothetical protein CHLNCDRAFT_51260
TrEMBL	E1ZA20	0.0	E1ZA20_CHLVA; Uncharacterized protein
STRING	XP_005849086.1	0.0	(Chlorella variabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	7e-12	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Entrez Gene	17356760

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]