PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_38000010

Common Name

CHLNCDRAFT_55506

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 542aa MW: 57553.1 Da PI: 5.3224

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_38000010	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9e-08	89	138	7	56
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + r+q+NReAA r+RqR +++ eL+ ++ e+++L e e+l fgenesh3_pg.C_scaffold_38000010 89 ADRRQRNREAAARYRQRQRQQESELTAQLEAAHLERDELLAEQERLLTRQ 138 67**************************************9999986555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0054	83	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-7	88	141	No hit	No description
Pfam	PF07716	5.5E-5	90	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-6	90	141	No hit	No description
PROSITE pattern	PS00036	0	91	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.887	91	134	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MPQQAQLQQL LEQAVAGWGP VDEPVPAVPW QQAESDEAAA AEALAGVAAA TAAAAGAAAA 60 PPGAQAAAGA AAAQPAALAA TSAGQDVTAD RRQRNREAAA RYRQRQRQQE SELTAQLEAA 120 HLERDELLAE QERLLTRQQA LLKMDAVQQD LHQQIRILCA PEGPVLTAAV GSAAAMRANG 180 GPQSAAEVVV ETERTFVEEL RTVVSADSPG AAAEAALRLL PANFQSALEA DAAAFVEQCG 240 QLQRQIYELV ASQGFSPIPL HPQPTAEAIK QCALLRKLLL ALSMARPSPP KLMRLMATSS 300 AVPPTTWQQA ADRLRPTLTP EQLQQLAQAR QGWMRSMGPL LARMGFQLSR PALQSWQVAF 360 AALAAAGSPP AQEQWAAAPV PLGPLSEVQG TGAASGSGGE PIQAGAAAWR PLLLAPPQQA 420 QPGAVGTRRT EGQQQPAPYG TSMQQAGRSR EGLQRELRHL GESLQRAWVT LVTFLLATIQ 480 TMTLWQCTLV LATCHPHFPD LVSVVAYLLD GPQQQQQQQQ QQQQQQQQQQ QQQQATVEEV 540 A*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MPQQAQLQQL LEQAVAGWGP VDEPVPAVPW QQAESDEAAA AEALAGVAAA TAAAAGAAAA  60
PPGAQAAAGA AAAQPAALAA TSAGQDVTAD RRQRNREAAA RYRQRQRQQE SELTAQLEAA  120
HLERDELLAE QERLLTRQQA LLKMDAVQQD LHQQIRILCA PEGPVLTAAV GSAAAMRANG  180
GPQSAAEVVV ETERTFVEEL RTVVSADSPG AAAEAALRLL PANFQSALEA DAAAFVEQCG  240
QLQRQIYELV ASQGFSPIPL HPQPTAEAIK QCALLRKLLL ALSMARPSPP KLMRLMATSS  300
AVPPTTWQQA ADRLRPTLTP EQLQQLAQAR QGWMRSMGPL LARMGFQLSR PALQSWQVAF  360
AALAAAGSPP AQEQWAAAPV PLGPLSEVQG TGAASGSGGE PIQAGAAAWR PLLLAPPQQA  420
QPGAVGTRRT EGQQQPAPYG TSMQQAGRSR EGLQRELRHL GESLQRAWVT LVTFLLATIQ  480
TMTLWQCTLV LATCHPHFPD LVSVVAYLLD GPQQQQQQQQ QQQQQQQQQQ QQQQATVEEV  540
A*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005842917.1	0.0	hypothetical protein CHLNCDRAFT_55506
TrEMBL	E1ZTI6	0.0	E1ZTI6_CHLVA; Uncharacterized protein
STRING	XP_005842917.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17350266

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]