PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | fgenesh3_pg.C_scaffold_28000005 | ||||||||
Common Name | CHLNCDRAFT_54975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1474aa MW: 149567 Da PI: 8.8046 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.9e-07 | 889 | 936 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W++ E l+ +v+q G + W+ + r ++ +gR+ ++++ +w++ fgenesh3_pg.C_scaffold_28000005 889 AWSPSEVAALITGVQQCGVNKWEQVRRAFPqelQGRSVEEIRAKWRSM 936 6********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.7E-8 | 132 | 188 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.751 | 132 | 183 | IPR019787 | Zinc finger, PHD-finger |
SuperFamily | SSF57903 | 2.26E-9 | 133 | 185 | IPR011011 | Zinc finger, FYVE/PHD-type |
SMART | SM00249 | 4.3E-5 | 134 | 181 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 135 | 180 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00717 | 8.4E-10 | 886 | 939 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.79E-9 | 888 | 938 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-8 | 889 | 938 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.5E-6 | 889 | 936 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.178 | 890 | 937 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.22E-8 | 890 | 937 | No hit | No description |
SuperFamily | SSF144232 | 1.64E-6 | 1438 | 1465 | No hit | No description |
Pfam | PF01753 | 6.2E-6 | 1438 | 1461 | IPR002893 | Zinc finger, MYND-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1474 aa Download sequence Send to blast |
MQGTGAQMRY VRRHAPAATC TSSAASVRCR SIRPHFARVS DSQLFPAQIL PLAIIQLGRH 60 LSWLSSGKLL VAARLERGDP SLLRKGPGAA RQALPGCTRR GTRSTRERTG GMPPKKHWRQ 120 RSVLQIGADG KLDGCAACED SGELLCCERC PHTFHPRCCG YAGFDDVPGH PEPNWLCWFC 180 AGHNRYKQST SKLAVRNGDE VKVAYNDKCE VYYAAKATSV TATHVTCKYI HFADAPPEKL 240 PRTSVRLWRG THDPAAWVFD KKDCAYEPRS RCAPVDIPKL QSTANAARAV AAAAAAAAAA 300 AAPPATAAAG AGGSTPGSPK PLQQAQQAQQ AQQGQGGAAA APARPGAGAA SPVAAAGLRG 360 GQEPASPPSK KQKREQEQEQ PLPAAAAAAA DAREGQRKDE QQPQPKPAPL PAEPAQQGAA 420 AAKRKAAAAE PAAAAGGSGG SKQAPGPSSK KQRKGEGEAA QASAQAAPAA VPAAGASGGK 480 RRPGRPKGSG KKQRQAQREA AAAGNGGQGS PAEQASAAPE APSAALRPPA TAPEKDSKPA 540 AAAAGEAGTA VPASSPQLAA AASGDAAGGS HAGEPGGSRP AAEAEEQAAA VAQQPSSAAA 600 SGGGGGGSEL ASASAAAPSA SGAASQSQGG AASDGGRLSG GPAAAARRES GAEEAEAAAA 660 AMAAAAAATA AATISPQAVL AQRLAARKQP SPQLYGDAYD LPSDEDDAEQ EAAQAAAPAR 720 QQQGAQQGAQ QAAGEEQGEP QEGQAAAQEQ GQAAEPGRAP EQPSQQQQAE RLSGQQAGSG 780 SDVAAAAAQP SPSLPLQQQQ QQEEDEEDED EWISIDDIVL QPEPHLAAPA AAAAAAAVVG 840 RPPPQQQPAA AAPAPAPPPA PAAAPAGTGA AGAVAAAPED APVPAAPAAW SPSEVAALIT 900 GVQQCGVNKW EQVRRAFPQE LQGRSVEEIR AKWRSMKDRL ALSPPKGCGG GPSRGRMGAS 960 GPAVVADRVL SPTKASPRAV STLLLAAAQQ ASAAAAAAAA GAAAGGQPGA SLAAAAATAA 1020 ASDDWRHPSA FPAAAGAGLK LSAGALALRV GDLAEVRAVD DDYRGGWFLA RLLQFRTEPS 1080 QLGERVSVLL EYADFREEGE GGPKTRGNGW PSLHTTEDGR WVFPRIRPAS RPLKPPAPPA 1140 SLAPGQPVEA FLNDGWWMGE VVSVEPGTVA VRFEPWPLGE GDFSFYAPEH VRPAHPLAGA 1200 GFGMVEAPPP PAGFTERARQ AQQQMQQLER LLGGGRAGAG AAPPGGGTPP LGLGGAMLPA 1260 HAHPHRHQRQ HDHHQQQQQQ QQQQQHGYGQ PAQQAAAAPQ PHQSPPRGLG GATLARSRSH 1320 PGLRSPSPAS AAAAHGCSPA PQGSTPPLAG THPHAAQLQL AQQLAQQQQQ QEHLARQQLV 1380 QQLQAAGAAR AAAPPAGQRP QAVLQAAPGQ HQQGPPQPAP PPDFFALAVR QFRASLPECR 1440 AVRYCSEACS HAHWKAHKAE CRRLRTAAGS AQP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_005843697.1 | 0.0 | hypothetical protein CHLNCDRAFT_54975 | ||||
TrEMBL | E1ZRA9 | 0.0 | E1ZRA9_CHLVA; Uncharacterized protein | ||||
STRING | XP_005843697.1 | 0.0 | (Chlorella variabilis) |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 17351024 |
Publications ? help Back to Top | |||
---|---|---|---|
|