PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_28000005
Common NameCHLNCDRAFT_54975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB_related
Protein Properties Length: 1474aa    MW: 149567 Da    PI: 8.8046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_28000005genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07889936347
                                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                      +W++ E   l+ +v+q G + W+ + r ++   +gR+ ++++ +w++ 
  fgenesh3_pg.C_scaffold_28000005 889 AWSPSEVAALITGVQQCGVNKWEQVRRAFPqelQGRSVEEIRAKWRSM 936
                                      6********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.7E-8132188IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.751132183IPR019787Zinc finger, PHD-finger
SuperFamilySSF579032.26E-9133185IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002494.3E-5134181IPR001965Zinc finger, PHD-type
PROSITE patternPS013590135180IPR019786Zinc finger, PHD-type, conserved site
SMARTSM007178.4E-10886939IPR001005SANT/Myb domain
SuperFamilySSF466899.79E-9888938IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-8889938IPR009057Homeodomain-like
PfamPF002499.5E-6889936IPR001005SANT/Myb domain
PROSITE profilePS500907.178890937IPR017877Myb-like domain
CDDcd001671.22E-8890937No hitNo description
SuperFamilySSF1442321.64E-614381465No hitNo description
PfamPF017536.2E-614381461IPR002893Zinc finger, MYND-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1474 aa     Download sequence    Send to blast
MQGTGAQMRY VRRHAPAATC TSSAASVRCR SIRPHFARVS DSQLFPAQIL PLAIIQLGRH  60
LSWLSSGKLL VAARLERGDP SLLRKGPGAA RQALPGCTRR GTRSTRERTG GMPPKKHWRQ  120
RSVLQIGADG KLDGCAACED SGELLCCERC PHTFHPRCCG YAGFDDVPGH PEPNWLCWFC  180
AGHNRYKQST SKLAVRNGDE VKVAYNDKCE VYYAAKATSV TATHVTCKYI HFADAPPEKL  240
PRTSVRLWRG THDPAAWVFD KKDCAYEPRS RCAPVDIPKL QSTANAARAV AAAAAAAAAA  300
AAPPATAAAG AGGSTPGSPK PLQQAQQAQQ AQQGQGGAAA APARPGAGAA SPVAAAGLRG  360
GQEPASPPSK KQKREQEQEQ PLPAAAAAAA DAREGQRKDE QQPQPKPAPL PAEPAQQGAA  420
AAKRKAAAAE PAAAAGGSGG SKQAPGPSSK KQRKGEGEAA QASAQAAPAA VPAAGASGGK  480
RRPGRPKGSG KKQRQAQREA AAAGNGGQGS PAEQASAAPE APSAALRPPA TAPEKDSKPA  540
AAAAGEAGTA VPASSPQLAA AASGDAAGGS HAGEPGGSRP AAEAEEQAAA VAQQPSSAAA  600
SGGGGGGSEL ASASAAAPSA SGAASQSQGG AASDGGRLSG GPAAAARRES GAEEAEAAAA  660
AMAAAAAATA AATISPQAVL AQRLAARKQP SPQLYGDAYD LPSDEDDAEQ EAAQAAAPAR  720
QQQGAQQGAQ QAAGEEQGEP QEGQAAAQEQ GQAAEPGRAP EQPSQQQQAE RLSGQQAGSG  780
SDVAAAAAQP SPSLPLQQQQ QQEEDEEDED EWISIDDIVL QPEPHLAAPA AAAAAAAVVG  840
RPPPQQQPAA AAPAPAPPPA PAAAPAGTGA AGAVAAAPED APVPAAPAAW SPSEVAALIT  900
GVQQCGVNKW EQVRRAFPQE LQGRSVEEIR AKWRSMKDRL ALSPPKGCGG GPSRGRMGAS  960
GPAVVADRVL SPTKASPRAV STLLLAAAQQ ASAAAAAAAA GAAAGGQPGA SLAAAAATAA  1020
ASDDWRHPSA FPAAAGAGLK LSAGALALRV GDLAEVRAVD DDYRGGWFLA RLLQFRTEPS  1080
QLGERVSVLL EYADFREEGE GGPKTRGNGW PSLHTTEDGR WVFPRIRPAS RPLKPPAPPA  1140
SLAPGQPVEA FLNDGWWMGE VVSVEPGTVA VRFEPWPLGE GDFSFYAPEH VRPAHPLAGA  1200
GFGMVEAPPP PAGFTERARQ AQQQMQQLER LLGGGRAGAG AAPPGGGTPP LGLGGAMLPA  1260
HAHPHRHQRQ HDHHQQQQQQ QQQQQHGYGQ PAQQAAAAPQ PHQSPPRGLG GATLARSRSH  1320
PGLRSPSPAS AAAAHGCSPA PQGSTPPLAG THPHAAQLQL AQQLAQQQQQ QEHLARQQLV  1380
QQLQAAGAAR AAAPPAGQRP QAVLQAAPGQ HQQGPPQPAP PPDFFALAVR QFRASLPECR  1440
AVRYCSEACS HAHWKAHKAE CRRLRTAAGS AQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843697.10.0hypothetical protein CHLNCDRAFT_54975
TrEMBLE1ZRA90.0E1ZRA9_CHLVA; Uncharacterized protein
STRINGXP_005843697.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]