PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_25000062
Common NameCHLNCDRAFT_54787
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 712aa    MW: 73051.1 Da    PI: 8.5088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_25000062genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP384.4e-12306351246
                                      -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTT CS
                              SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqC 46 
                                      Cqv++C a+l++a ++y+rr+++C+ +s  p++ +sg  qrfCqq 
  fgenesh3_pg.C_scaffold_25000062 306 CQVPSCCAELATAdRSYYRRYRICKECSVKPSIHLSGSLQRFCQQA 351
                                      **********998789*****************************6 PP
2SBP29.51.9e-093764084375
                                      -TTTSSEEETTT--SS--S-STTTT-------S CS
                              SBP  43 CqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                                      C  C+rfh + ef+ ++rsC   La+h  rr++
  fgenesh3_pg.C_scaffold_25000062 376 CMHCARFHPVGEFEGSRRSCIAALANHRTRRQR 408
                                      99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-23297395IPR004333Transcription factor, SBP-box
PROSITE profilePS5114115.623303409IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-9304351IPR004333Transcription factor, SBP-box
PfamPF031108.5E-9306352IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-7375412IPR004333Transcription factor, SBP-box
PfamPF031102.4E-8376408IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MAALPSPATA AAATGSCSGT LPDATEAAAQ AETAGRRSEA TELFQDDKRR KHDHDASAAG  60
EQQAAAGGSS DAASGSASRG GTAPPESRHH PAEEDADGQN RSQQTAVGAR SAATGGSGSS  120
HSMPSSGSPP AAQAAAVDLP PEAGCASEAA ESPPQQQQQQ NRALGVSTEL AAGGAAGASM  180
RPGPSLPLLE AAAAGSLPIL YGPGMQQQAP DVVPQLDASR TLGDVPAHDS WWQQQQQQQQ  240
QQQQQQLSPG AGAPATILPW ASPGRDPLLR GRQPAGTAAP ALARFVPLSE KVKRKCGRQP  300
ATSVLCQVPS CCAELATADR SYYRRYRICK ECSVKPSIHL SGSLQRFCQQ ARQPRRAGKA  360
PGRATHGLRA PVLPICMHCA RFHPVGEFEG SRRSCIAALA NHRTRRQRLP HSSGSRSPSA  420
RRRPAGVLAR QAGSDSDSEA AGAADKSEAG EGSARSEGRS GASCARSTHH MAASASPAAL  480
PLQQQQQQQP QHLAATLPSS SSPRSRLLPQ QQGPGWVSGV DLAGAGMVWQ AAPPHVPPVL  540
PRPAARPELA SQSNGGAAMQ HAGPAGSHRS MPALASYRSA PQWHVAAAPP AAPAGEELGT  600
TQPPGSLSRE QAEGRSALVL PSSPGSAENC SGEWGAPLQA PPALLPAVVL PPSAAGESHF  660
EGWIASVLPT APDDPFEALL AARHCTDLLE ILSSFLSPRG KRSNNTSLFG I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844033.10.0hypothetical protein CHLNCDRAFT_54787
TrEMBLE1ZQH00.0E1ZQH0_CHLVA; Uncharacterized protein
STRINGXP_005844033.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-13squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]