PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_24000087

Common Name

CHLNCDRAFT_54703

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 406aa MW: 42609.8 Da PI: 6.0501

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_24000087	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.8	1.1e-18	257	305	5	51
RWP-RK 5 isledlsk..yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +sle l++ yF++pi++AA eL v++T+LK+ CR ++I RWP+Rk +s fgenesh3_pg.C_scaffold_24000087 257 LSLEFLEEngYFDMPIQQAAAELHVGVTTLKKVCRVNNIGRWPFRKRSS 305 55555543339***********************************776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.357	240	327	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-16	265	306	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MTSPSPVCEA TLLAPDFARL DDHRAPLCTP TLRALGGDHL AVGTHSLSSP HIASPALAGW 60 TPRLTGKDED AEEGGGGGPR LRSIERASLA AATAAPSLAL PIEPVPLPPL LQSNFLSVSL 120 PTNVSEFAGV ADFNQTQAGS NSDAPVGVCG MPQLLVKAEP TTSAGSESAG TCQLPAAGML 180 NSSGGKHPTY ATLTADGVAA ALAMSSDIMQ QRDQELEQQQ QFGTHNCSSN GNGSRPGTAS 240 ASAVAAAAAD ELSDNRLSLE FLEENGYFDM PIQQAAAELH VGVTTLKKVC RVNNIGRWPF 300 RKRSSLNRLI EKTREYFAGD SQQCAEALAQ LEAQRSVLQA QQGEDIPESV KRYRQSIFKL 360 DYKVKCAKRS GRWRQAVEHG SGGTVELLSA LGLPLQPPSL SPGHN*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MTSPSPVCEA TLLAPDFARL DDHRAPLCTP TLRALGGDHL AVGTHSLSSP HIASPALAGW  60
TPRLTGKDED AEEGGGGGPR LRSIERASLA AATAAPSLAL PIEPVPLPPL LQSNFLSVSL  120
PTNVSEFAGV ADFNQTQAGS NSDAPVGVCG MPQLLVKAEP TTSAGSESAG TCQLPAAGML  180
NSSGGKHPTY ATLTADGVAA ALAMSSDIMQ QRDQELEQQQ QFGTHNCSSN GNGSRPGTAS  240
ASAVAAAAAD ELSDNRLSLE FLEENGYFDM PIQQAAAELH VGVTTLKKVC RVNNIGRWPF  300
RKRSSLNRLI EKTREYFAGD SQQCAEALAQ LEAQRSVLQA QQGEDIPESV KRYRQSIFKL  360
DYKVKCAKRS GRWRQAVEHG SGGTVELLSA LGLPLQPPSL SPGHN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844285.1	0.0	hypothetical protein CHLNCDRAFT_54703
TrEMBL	E1ZPP5	0.0	E1ZPP5_CHLVA; Uncharacterized protein
STRING	XP_005844285.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	8e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17351548

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]