PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_2000108
Common NameCHLNCDRAFT_49863
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 1241aa    MW: 129832 Da    PI: 7.5737
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_2000108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP105.73.4e-3352127277
                                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                     Cqv+gC+ ++  +k+yh+r+k+Ce h ka vv  +gl +rfCqqC++f  l++fD ekrsCr rL+khn+rrr+++
  fgenesh3_pg.C_scaffold_2000108  52 CQVDGCTIEVGGMKDYHSRYKICELHLKAHVVQKDGLPHRFCQQCGKFQPLEDFDGEKRSCRARLDKHNARRRRQR 127
                                     *************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.8E-2849113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114126.24849126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-2951127IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3052125IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.76E-5730880IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-5738884IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1241 aa     Download sequence    Send to blast
MAFVDDAVWQ QADWKWDPHG LKATPADAAA SKAAGGKGLQ RNTAADGGKL GCQVDGCTIE  60
VGGMKDYHSR YKICELHLKA HVVQKDGLPH RFCQQCGKFQ PLEDFDGEKR SCRARLDKHN  120
ARRRRQREMA HMLKKTGTVD EKLLAEKYGL TEEEIAPKLA RMAKQGFPLA KPARSGSAGP  180
SAAGTHRSPS GGSASQQPTE MGATSTSPAS AAGAQREAEQ HAQASALLKH LQLQQAAQEA  240
AQAAAAGMAR PPAAPATTLP SGAAMGALLL DDDFLDEVFN PMMAQGLIAG AGQPVGPPQQ  300
AAANFLQMDA ASAMDLDDMA GLEQLTKELM AGAAAAQLPA QRAPLAGGPG AAWPQPAAAL  360
PPGIPRHVLS SMPATPSSSD TVMPQLPPYL AAQHAAAAFP GLLGGATAFG GALQPPPPLP  420
GALRLDALGG GRVESPGSVR SSATAMDLGA PPPLPGSVLD EALNLLSYDS AQITYVPEEK  480
LVRFSAKLFN CTPAQLPSDL KASLVNMLSC QSMEGYLRPG CVHITVNALM GPEERALLAS  540
SGVRAVVERL VARQPDAFWS QHAMLVQLGD KLALVREGRV VHVLATGSSS LFPRVAALRP  600
LVAEPDAAGC CEVAVWGYNL GQEDDTVLAR CRGAYAEVER LSLEAEPAWQ GMQKLSLRLS  660
GLRAGGAVQL EVMRGGYISG SKAMLVSHDR ALAAEVRSLE AEDGATDVDT LLFQLAASGE  720
YGAGGREYSD ADREVLGKSS RRLLAYAVQR KWVAATRTLL AAVAADQSPG EAMAAVDIMC  780
VGTTGMPLLQ LAVRSQCLEL VTAVLDWGAQ HGHVFRSTTP GRRGLTALHL AGLVRDGGAI  840
MSLLSQRCAD AAGGWERATA EDGSLPIDFA RRTGTAGVLE RFLATKHYEA AAAGVAAAAA  900
CGAARGVEAP PPLPADPAPK SGLHRRKPAT DSASSSRNPS KSLGAGKAGA GGAEEEEEEE  960
EDAVAATKAA LKACLAKERE QGALLRFCNR ALECRYQAWY SSGQVPVDIA FLVIATLSQG  1020
AWIFRWSLAA SWLGVAMVAL MAGNAAMMQM AVLFPGTYVR WREPLCVCSH VAHKLAQTAV  1080
TLVPPVGTVF SATYNPTVAL LESSSLAQIH MLSFGMKMRF CTHLLVGLFH FTSAIAANDA  1140
VCAAAFPFLP GAQQQGRGRT AGTRLRPGRA AAHAGLVACG VCTVLMVLWQ ALACFALPCT  1200
LVYASEKRAR RIFLETMSDQ PLEACGAAGT RRSATSNDDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-21521251184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851140.10.0hypothetical protein CHLNCDRAFT_49863
TrEMBLE1Z4D60.0E1Z4D6_CHLVA; Uncharacterized protein
STRINGXP_005851140.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP550058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-23squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]