PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_18000082

Common Name

CHLNCDRAFT_53892

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 443aa MW: 46622.2 Da PI: 9.313

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_18000082	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.2	6.6e-18	23	71	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++++ e l++ F+lp ++A+ Lgv+lT+ KriCR++G++ WP+R +k+ fgenesh3_pg.C_scaffold_18000082 23 SDVTWEALASVFHLPCAQACLALGVGLTIFKRICRKHGLHQWPYRSLKK 71 67999******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.573	6	92	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-17	25	71	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MKRDGMPAPQ QSRKKTKAGV YTSDVTWEAL ASVFHLPCAQ ACLALGVGLT IFKRICRKHG 60 LHQWPYRSLK KQRTMSRDGK LEGADILRIV TACRYPNVGS QQQQARQQSS PPLPLPELAP 120 QPLQPSPLQR TEQHHHQEQQ AAHASNPDVD SSGSSGSKVH RQQEEAGGNL EDICSVDSRQ 180 RKRRGSPLQQ QVRRPPSPPQ AQQPDMQGTR GAAGDSSHTR QQGLGGDRPA SRLDVPLPSE 240 AAAEADAGPE QDAQQQPPQQ QPASTQTLPT MLPGLSLLLG PQLPTLQAVT AALSGAQHQS 300 PGAEQAPAAS QLQQTAEMLN QLADFLDAQA RAAAGAALAG HRQGQAAAAP SADLLISSLL 360 NNAGWASGSL SLPLFGTGGS SSGSSNLSAD SSVASAMASH LQLHALLEGL LAVSGKLFTP 420 SDPGLPPPIR RELQPTGARQ QK*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MKRDGMPAPQ QSRKKTKAGV YTSDVTWEAL ASVFHLPCAQ ACLALGVGLT IFKRICRKHG  60
LHQWPYRSLK KQRTMSRDGK LEGADILRIV TACRYPNVGS QQQQARQQSS PPLPLPELAP  120
QPLQPSPLQR TEQHHHQEQQ AAHASNPDVD SSGSSGSKVH RQQEEAGGNL EDICSVDSRQ  180
RKRRGSPLQQ QVRRPPSPPQ AQQPDMQGTR GAAGDSSHTR QQGLGGDRPA SRLDVPLPSE  240
AAAEADAGPE QDAQQQPPQQ QPASTQTLPT MLPGLSLLLG PQLPTLQAVT AALSGAQHQS  300
PGAEQAPAAS QLQQTAEMLN QLADFLDAQA RAAAGAALAG HRQGQAAAAP SADLLISSLL  360
NNAGWASGSL SLPLFGTGGS SSGSSNLSAD SSVASAMASH LQLHALLEGL LAVSGKLFTP  420
SDPGLPPPIR RELQPTGARQ QK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005845304.1	0.0	hypothetical protein CHLNCDRAFT_53892
TrEMBL	E1ZLV2	0.0	E1ZLV2_CHLVA; Uncharacterized protein
STRING	XP_005845304.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17352669

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]