PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_17000101

Common Name

CHLNCDRAFT_53768

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 914aa MW: 98161.9 Da PI: 9.3628

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_17000101	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	57.6	3.4e-18	54	124	1	73
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +C+v+gC + l+ y + +++C h +ap+ ++g+ r+CqqC++ h+l+ fD++++sCrr L++h + r fgenesh3_pg.C_scaffold_17000101 54 MCRVPGCVEALQP--GYSETYRICPLHKHAPSFEMEGRLVRHCQQCGKLHDLEAFDKARHSCRRSLQRHQRNR 124 6*****99975..8***************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-17	48	114	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.666	52	127	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-15	54	126	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-19	55	124	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MNSHAWPLTV RPAAEAATAT ASAAPAAKST STHSSCPSTL TPPLSQQRAG SRRMCRVPGC 60 VEALQPGYSE TYRICPLHKH APSFEMEGRL VRHCQQCGKL HDLEAFDKAR HSCRRSLQRH 120 QRNRLLRQMR EEGGAPAAQA AQAPAPTRQQ QQQVPLLAHA LPLPRQGSMQ GQKRGRDEWP 180 GQAQGAAAPA AAPAGGGGQA AGAALAAAPV GCPPAACWHQ LLGLMMQQQQ LMQQDQQNQW 240 QQQQLMQQDQ QHQRQQQQLM QQDQQHQRQQ QQLMQQDQQH QRQQQQLMQQ DQQHQAQQQQ 300 LMQQDQQHQR QQQQLMQQDQ QHQAQQQQLM QQDQRLMQHQ WQLHQQHQRH QYQQLLLLSL 360 EDAQPQQPTT PRTPLPLTPL PVSQGAEAAA PRPAAGQPSA AAPAAALPPP PSARPAAAVH 420 IDVEQLPPVP ADLLELSCLL GSQPLPQRPR PDLVRRAMQL LDEPLPELRD MPGIEELQQF 480 NERLGLHLRA ASAAAADDDK APKAAKRHRL AGPAAGAGGV PAVPARTASP SPSPSLPLSL 540 GFGSCEWGVP GAAQATRAAP VAPAGVQPLA AITPADSATL ASLVPRQPMT LARAGSLTPA 600 AAAAAAAAVA ATGAAPGRAS PLARAPSATY VVPLHILCCA HACVCTFIIH HIDETKPNLP 660 FQQPPNVQGA VGPTAGPSES VGPGGHVAPQ HVGSWPPAAR AVRAASSTAT SPPSIWLSGE 720 GAELHGCQVP GCFEELQAGY NEDYRMCRRQ QQVAHETRCG SPQQHQRKRT QRQQQHEGRG 780 QKRGRAALAE DCAPAVDSPG TQSSAPAAQE PKQTCWPEAL HALWQQQQPG PALYQQLPMS 840 PATPLLVPLP SQASKRSIVL TLVPATTVVQ PKRASRSITR CSLAQRQSKP IPSGTPNRIA 900 KASAQASPGP IHY*

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MNSHAWPLTV RPAAEAATAT ASAAPAAKST STHSSCPSTL TPPLSQQRAG SRRMCRVPGC  60
VEALQPGYSE TYRICPLHKH APSFEMEGRL VRHCQQCGKL HDLEAFDKAR HSCRRSLQRH  120
QRNRLLRQMR EEGGAPAAQA AQAPAPTRQQ QQQVPLLAHA LPLPRQGSMQ GQKRGRDEWP  180
GQAQGAAAPA AAPAGGGGQA AGAALAAAPV GCPPAACWHQ LLGLMMQQQQ LMQQDQQNQW  240
QQQQLMQQDQ QHQRQQQQLM QQDQQHQRQQ QQLMQQDQQH QRQQQQLMQQ DQQHQAQQQQ  300
LMQQDQQHQR QQQQLMQQDQ QHQAQQQQLM QQDQRLMQHQ WQLHQQHQRH QYQQLLLLSL  360
EDAQPQQPTT PRTPLPLTPL PVSQGAEAAA PRPAAGQPSA AAPAAALPPP PSARPAAAVH  420
IDVEQLPPVP ADLLELSCLL GSQPLPQRPR PDLVRRAMQL LDEPLPELRD MPGIEELQQF  480
NERLGLHLRA ASAAAADDDK APKAAKRHRL AGPAAGAGGV PAVPARTASP SPSPSLPLSL  540
GFGSCEWGVP GAAQATRAAP VAPAGVQPLA AITPADSATL ASLVPRQPMT LARAGSLTPA  600
AAAAAAAAVA ATGAAPGRAS PLARAPSATY VVPLHILCCA HACVCTFIIH HIDETKPNLP  660
FQQPPNVQGA VGPTAGPSES VGPGGHVAPQ HVGSWPPAAR AVRAASSTAT SPPSIWLSGE  720
GAELHGCQVP GCFEELQAGY NEDYRMCRRQ QQVAHETRCG SPQQHQRKRT QRQQQHEGRG  780
QKRGRAALAE DCAPAVDSPG TQSSAPAAQE PKQTCWPEAL HALWQQQQPG PALYQQLPMS  840
PATPLLVPLP SQASKRSIVL TLVPATTVVQ PKRASRSITR CSLAQRQSKP IPSGTPNRIA  900
KASAQASPGP IHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005845592.1	0.0	hypothetical protein CHLNCDRAFT_53768
TrEMBL	E1ZL28	0.0	E1ZL28_CHLVA; Uncharacterized protein
STRING	XP_005845592.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-10	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Entrez Gene	17352943

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]