PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh3_pg.C_scaffold_1000250

Common Name

CHLNCDRAFT_49552

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 394aa MW: 40318.9 Da PI: 7.6052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh3_pg.C_scaffold_1000250	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	147	200	2	55
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++++++++++NReAArrsR+RK ++i+ L+ ++ L + N L k +ee + fgenesh3_pg.C_scaffold_1000250 147 RDREAAIKRARNREAARRSRERKMERIAGLQAEAGRLRSNNFVLLKCVEEVATK 200 678899***********************************9999888877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-5	146	210	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.358	148	211	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.5E-6	150	196	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-8	153	198	No hit	No description
SuperFamily	SSF57959	7.5E-7	154	197	No hit	No description
PROSITE pattern	PS00036	0	154	168	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEAPYQSGLR RAASAPSLES LAQTALRLET TPCSVAELHA LDDEVAHVLR RTLADTQREL 60 LAAVEAGVLR GGSGGGGGRQ YTSDSQEGGS EGEDGASGQG SGRRRSGGSE RQRSSSADGG 120 PSTAGGSGVA ADVEQELELE LAGLSARDRE AAIKRARNRE AARRSRERKM ERIAGLQAEA 180 GRLRSNNFVL LKCVEEVATK ALHARAENRQ LREKLASLAA ASTAAAEAAA AAGAGAASGA 240 CTPPPARRAA ALERELLLME AAPGSPTQLL PPLWPDHPDA AAAVAAAEPP ARALPTSAEL 300 RRELREALAG GSAADQHLLH PSPSAAGACL PHGRRQQQAS AGPQQHPAVV QLKQQGSLIR 360 ACSAPGSLLL GAATEAGVGP ELQPWLNHRG VAA*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEAPYQSGLR RAASAPSLES LAQTALRLET TPCSVAELHA LDDEVAHVLR RTLADTQREL  60
LAAVEAGVLR GGSGGGGGRQ YTSDSQEGGS EGEDGASGQG SGRRRSGGSE RQRSSSADGG  120
PSTAGGSGVA ADVEQELELE LAGLSARDRE AAIKRARNRE AARRSRERKM ERIAGLQAEA  180
GRLRSNNFVL LKCVEEVATK ALHARAENRQ LREKLASLAA ASTAAAEAAA AAGAGAASGA  240
CTPPPARRAA ALERELLLME AAPGSPTQLL PPLWPDHPDA AAAVAAAEPP ARALPTSAEL  300
RRELREALAG GSAADQHLLH PSPSAAGACL PHGRRQQQAS AGPQQHPAVV QLKQQGSLIR  360
ACSAPGSLLL GAATEAGVGP ELQPWLNHRG VAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	78	RGGSGGGGGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851842.1	0.0	hypothetical protein CHLNCDRAFT_49552
TrEMBL	E1Z2W8	0.0	E1Z2W8_CHLVA; Uncharacterized protein
STRING	XP_005851842.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17359100

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]