PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_50293
Common NameCHLNCDRAFT_57326
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family ERF
Protein Properties Length: 952aa    MW: 97595.7 Da    PI: 7.3189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_50293genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.1e-07387435155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 ++y+GV     +gr++A +r         ++ ++  f+taeeAa+a+++ +++l+g
  estExt_fgenesh3_pg.C_50293 387 PQYRGVAKLA-NGRYRATLRQ------AqTTLPIADFDTAEEAARAHDREALRLKG 435
                                 68****9777.8******999......34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.639281340IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-8283341IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-4287341IPR001471AP2/ERF domain
CDDcd000187.89E-12387445No hitNo description
SuperFamilySSF541719.15E-10388445IPR016177DNA-binding domain
SMARTSM003804.9E-8388449IPR001471AP2/ERF domain
PROSITE profilePS5103213.709388443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12388444IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-4620648IPR001471AP2/ERF domain
SMARTSM003802.9E-4691751IPR001471AP2/ERF domain
PROSITE profilePS510329.875691745IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-8691745IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-7692745IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MPTGLDECSG AAAPSGRLVP AADGAGGGGV LPVSASPSLA GLMHMQLPPP PMQLQLPPLS  60
MGMQSPLLPL TSFPSGGAGS GSTAAMPGAY LTLPFMHHQQ EGAMAAMAAS QHLHQFSLPA  120
AGSASGLGGL SLGWPFGGDG GAAAAAAAAA AQLAPASSGM LQPPTGALHR DAAQQPSQQH  180
QQQHQHQQQQ QQQQQQQQQQ RQQAHQDEVS APQIMSNTDV GGSTEGTQAW GGGPVGGGGG  240
GGGGGGTGSG RGTALEGDES GAAESRLKAP AASRKAPLSQ PRKGVVWDRH GCKWRARLHT  300
DKTRHIGYFE REEDAGQAWD LAALNYYGET SEALSRINFP ASLTLFRQQQ AAAAAAVAAR  360
QQQQAAAAAA AQQAEEEGRP PGQPCEPQYR GVAKLANGRY RATLRQAQTT LPIADFDTAE  420
EAARAHDREA LRLKGRGSIT NFPLSDYLGP DAAAGLAASP SAPRLACGGS TDRLSGLASD  480
PLSGGAPGPA SQQPGWQRQG SAGPSGVTSG GGGGGPLLHT PAMAGLGCKR QKLGEESGGD  540
APPLAQPSAT RPHHQHQHQQ PHGGSNSGGG GGGGGAPGVF HSPSDAALGS RLDESAGFAG  600
VRRLACASGD QWQAFLSLDL GKFGSAEAAA RAHDRAALLA AGFLAPLNAA LPDAYAAGAA  660
ATAQASRPAQ QQQHHQQHHQ QPPPPQQQEA DYRGVVNRSG AWLALLDLGG SPYELGPFGS  720
AAEAARAYDR YSMLLEGVRA RTNFPPWEYL ASPGECQALL SAVSQVQQQQ QQAARGSQAT  780
PQGNRRRTPP SADRFEPYAQ QQQQQQQQQE PAVIHAVLLG GPRHAQPGFQ GGLLQQQQHH  840
HPPQQQQQAY RQQLSLPGLP GQFMPVPGQQ QQQLLHSHSW LQPLAGQLPQ LASSGAVEAG  900
RHSFVGGASA AAAADRDAAG PEAPWTASSL PGANVMIAGV SGLPASASQQ Q*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849921.10.0hypothetical protein CHLNCDRAFT_57326
TrEMBLE1Z9S00.0E1Z9S0_CHLVA; Uncharacterized protein
STRINGXP_005849921.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP574088
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]