PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_50059

Common Name

CHLNCDRAFT_57199

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 513aa MW: 53586.8 Da PI: 6.4047

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_50059	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.4	1.1e-06	149	192	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k +k ++ + N++A++r+R+RKk++ e e + +L+++ aL estExt_fgenesh3_pg.C_50059 149 KHRKTAKQQEANKIAQQRYRERKKQKFVEMEAQISVLSKQLAAL 192 567999999******************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-5	146	193	No hit	No description
SMART	SM00338	0.0081	151	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-5	153	213	No hit	No description
CDD	cd14686	2.63E-7	153	206	No hit	No description
PROSITE pattern	PS00036	0	155	170	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MKVNAGQTAG MHGAMMPPQA GSMGGMQLAY MQAAQQMGQP GMMLPAMPAG GALPQMVMAP 60 QQQAGLPVAA AGALPMGMLG GGGGLPDPYA PVPPATSPTP FGAPGGGPMM GLDLQLNGGG 120 YGGGGGAPPA AQLSGDDSQG GGSQGGDSKH RKTAKQQEAN KIAQQRYRER KKQKFVEMEA 180 QISVLSKQLA ALQALQSRNQ ILEGLNGELQ TQLMSKEKEV ERLKLALDVS AERSLSGHSH 240 PSSPSADGDH GTTTALREHG DEASHPTTNA CDLLPQDMAG IDFKKGFADQ VVRLREFVEL 300 HGVTQGAVAD HGLTPQQMQE LGMIVARSCQ LCQAALRAEG VRVIELISKD PSSFSTVDSA 360 TEAARWAQCL HVMHLAPEQQ EAMSLMLPHS SKNPSEDNTV EGRMQNMSQA GYLHVAKSSA 420 ELGDVLDKIK DNLRREQRAV MDLNCQLISK ILTPLQGAHY MLKAYPQHCD ALALSNTLAK 480 HLGREEFSEG GAAAAAGAAN PGIACQADGG CC*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MKVNAGQTAG MHGAMMPPQA GSMGGMQLAY MQAAQQMGQP GMMLPAMPAG GALPQMVMAP  60
QQQAGLPVAA AGALPMGMLG GGGGLPDPYA PVPPATSPTP FGAPGGGPMM GLDLQLNGGG  120
YGGGGGAPPA AQLSGDDSQG GGSQGGDSKH RKTAKQQEAN KIAQQRYRER KKQKFVEMEA  180
QISVLSKQLA ALQALQSRNQ ILEGLNGELQ TQLMSKEKEV ERLKLALDVS AERSLSGHSH  240
PSSPSADGDH GTTTALREHG DEASHPTTNA CDLLPQDMAG IDFKKGFADQ VVRLREFVEL  300
HGVTQGAVAD HGLTPQQMQE LGMIVARSCQ LCQAALRAEG VRVIELISKD PSSFSTVDSA  360
TEAARWAQCL HVMHLAPEQQ EAMSLMLPHS SKNPSEDNTV EGRMQNMSQA GYLHVAKSSA  420
ELGDVLDKIK DNLRREQRAV MDLNCQLISK ILTPLQGAHY MLKAYPQHCD ALALSNTLAK  480
HLGREEFSEG GAAAAAGAAN PGIACQADGG CC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849754.1	0.0	expressed protein
TrEMBL	E1Z8R2	0.0	E1Z8R2_CHLVA; Expressed protein
STRING	XP_005849754.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7626	2	2

Link Out ? help Back to Top
Entrez Gene	17357122

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]