PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_40020
Common NameCHLNCDRAFT_57007
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 599aa    MW: 63329.2 Da    PI: 9.6462
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_40020genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.91.6e-242797274
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS
                         SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74
                                Cq   Ce+dls+ + ++rr++ C +h +a ++ ++g+ +rfCqqC+rfh+l+ fD +krsCr++La+h +rrr
  estExt_fgenesh3_pg.C_40020 27 CQ--ICEVDLSTERIFFRRYRACPQHVHADQIELEGRPHRFCQQCGRFHRLECFDGDKRSCREQLAQHAARRR 97
                                54..5*******************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-202186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.6742499IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.19E-202698IPR004333Transcription factor, SBP-box
PfamPF031101.0E-222797IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAAPAEAPAA AHHQPSPARA RGSSARCQIC EVDLSTERIF FRRYRACPQH VHADQIELEG  60
RPHRFCQQCG RFHRLECFDG DKRSCREQLA QHAARRRYLY RLRHGGGGSE GGGGAASGGH  120
ARSSGGKSSG GGPSASSGSE QGGQLDASAA AADTLLNYLP LPTAKCQRTA ELAGPALAPQ  180
PQQAPEPPHL PLPLSPPPQQ LQQMQQQLQQ CAPEWQQQQM QQSVADWQQQ QAPAPQQQHA  240
PFAWQRTDSS KSAQQPPWQR TDSGKSAAQP PWQRTDSGKS AQGQPPWQRA DSGLSGLSST  300
YRISGFLEAA AAAAMAAVAP ELGTPRSAAG EPPPGHHACQ SAQQHTPSPS PQPAAAAPPP  360
QQGQQQEEEE RLLEQQQQRL LAAELNRWVD EQLQQSPAEE RRLLAPLDSL PLRGSPARRS  420
HPTAGPRPAA GAARPARVRS AFSPPSAAAA AWLPPPRADV QELWGRLWQA VQPAGLGPPP  480
LALPQLGGAA GQPRLVLRPV PRRVGVLAPS LSAAVAAGQL PLGVAAAQAQ PLAALMRQMQ  540
RQTGPLQAHE LLQVLERLQP PPALVAVPMA PPAPPAPPPP ANSQLLSLLA SAAPSLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A5e-162297178squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124131GGKSSGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849983.10.0hypothetical protein CHLNCDRAFT_57007
TrEMBLE1Z7A10.0E1Z7A1_CHLVA; Uncharacterized protein
STRINGXP_005849983.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.11e-14squamosa promoter binding protein-like 15
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]