PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_300018

Common Name

CHLNCDRAFT_59250

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 1717aa MW: 174134 Da PI: 8.6439

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_300018	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	79.1	6.3e-25	774	846	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv C +dl + + ++ r++vC h+ a++v+v+g++qrfCqqC+rfh+++ fD + rsCr++Lakh errr + estExt_fgenesh3_pg.C_300018 774 CQV--CGTDLRSSRMFNMRFRVCPDHAAAESVVVDGIQQRFCQQCGRFHRVELFDASMRSCREQLAKHAERRRLR 846 666..******************************************************************9954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-21	768	833	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.102	771	846	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.12E-21	773	848	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.9E-24	774	844	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.20.1000.10	7.6E-5	1215	1295	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1717 aa Download sequence Send to blast
MPATQNRAAA VQIRLQVAMD SPSLSDDAKR FHIVWLARQM RKCSCPGRVC HQTRSAAWNR 60 LVQAQAPNRG LLALPIEVDE NVHAAPSHDS QQEATKMVEA VASGLLQASS RERGAASPRL 120 LPHRRSQRQA LKGMADALSS SRTPPGRHAA DAPEAGGCCR EATLSRSAAR GGPWAALLAA 180 AEREERAANG GVQGAGRWPV AEATAGRVPL GPAGGWQATA GLCASGGGMG EGWGGRDTAP 240 DDGASLPLRL MPTAPPAPLR TSMTRPGPLE PSQPGTAHRE SAAPGSPALE RAWECSAQAA 300 AGPTTGSGGG AWTLEARTPT VGAERQRRRS AAACGSPGPP RAAAEEHAAA CHAAGGSGAA 360 AAAAAAQRPC SRGQPWQLPP LAPCAIVPPG LDTLCGLPPL AEEDWRRLRM RAPSWHASDV 420 AAGRPPYWYT LLIGEIWTHN ATHLLRDYDP SAASHLPSVA SQAALVTAMS RQQLSVSLVQ 480 SPAGACIASL FDGVADDEFI EWLLEDGGGG VTSMGAADEA ASFCSAAAAP QRPHPAAERG 540 SPALCSLDRP GGAASPRAAA PAARPQQPQP AGRLSPPAGA ASSGPALGPH TPPMAEDLAA 600 QSSADIAAWL GGWAWLGGGD AELPMRSGPP PPRTIRQRQP PRQPGAAAAA AVAAAPGRPP 660 AAAPAPGAPR LPAPAGSSGA GAGAPPLAPC HDAQPLGSKR SASRRQRGAS PARSGTKQAG 720 GTRSSGGESA HSAHAPPAPA HISGRLSSSQ LLQAQLDADS LLLRPSKSGP QLCCQVCGTD 780 LRSSRMFNMR FRVCPDHAAA ESVVVDGIQQ RFCQQCGRFH RVELFDASMR SCREQLAKHA 840 ERRRLRRRKQ WAAQQAAAAA AAVAAAVASG DVALPDPDPS HAASLASGQP FSAAAAAAAA 900 GSLTPSWLTA GGLGPAGGSL PLPTAGGSLP LAFSSGGATA PLLGSSGAGF GGGEGGGGYK 960 RRRGGGERGP VQLRPAASAG AGAVAHPRWQ QPPPRMLAQL GGESWQAQVA HLLEQQHSNT 1020 ALPAWPPLPA GLQQTLAAAG VGPSAHPSQQ HQQHQLHQHQ QGPAGELPHG TSTSALPPWQ 1080 PPPQQLALGP GGGGAAAPGH GGLTALEALE LQQSSSAFPP WQAAAAAGGH QNAGPGAAAA 1140 WRAQVDACLQ QLMQLVELMP RALVEAHLPA LLPVVMQLVG VLAPPGQQAP GQQAPPLLVL 1200 SVPKPELEAG GWQAQQAQQA AQQAQQAQQA AQQAQQAQQA AQQAQQAAQQ AQQAQQAAQQ 1260 EAQQQQQQQQ QAQQQPHFSV PGSYGAEPAP SWAGTEGEQA QQAQQQAQQQ APRTGGDSGS 1320 GAAAASQRSS GSQHGQLPPS WPSAPPLPAA AAVEPPGGGG GGAAVLLAAV AARAASSGGA 1380 PPPAAPQQPQ PQQQQQQQPP QLQQQHQGPS GSLGQLQAAA GARSEEGGLL GRRENGAFSP 1440 PAPAGSLGAP PPRPAASAPP PAAPALQPGS QPAASAPGAW PGAGGGSGGA PPGGLGGPGD 1500 ASLLPQQLLA ALGGGQLPAS LLQLPSLPAA QQGQLDVPRL LADCLSLLNS QPAAAPPPGD 1560 AQAALQQLLA GQGGLWGAQQ AQQQAQQHAQ QQAQQQAQQH AQQQAQQQAQ QHAQQHAQQA 1620 AQQAQQQAQQ QAQQHAQQQA SAQVLLSSLL QQPLAPQQAQ AQQAPQHAQH SHQQQQAQQA 1680 QQQQQQWGMD TLQHLLASVP LLQQPPPLPG QPQAPR*

Sequence ? help Back to Top

Protein Sequence Length: 1717 aa Download sequence Send to blast

MPATQNRAAA VQIRLQVAMD SPSLSDDAKR FHIVWLARQM RKCSCPGRVC HQTRSAAWNR  60
LVQAQAPNRG LLALPIEVDE NVHAAPSHDS QQEATKMVEA VASGLLQASS RERGAASPRL  120
LPHRRSQRQA LKGMADALSS SRTPPGRHAA DAPEAGGCCR EATLSRSAAR GGPWAALLAA  180
AEREERAANG GVQGAGRWPV AEATAGRVPL GPAGGWQATA GLCASGGGMG EGWGGRDTAP  240
DDGASLPLRL MPTAPPAPLR TSMTRPGPLE PSQPGTAHRE SAAPGSPALE RAWECSAQAA  300
AGPTTGSGGG AWTLEARTPT VGAERQRRRS AAACGSPGPP RAAAEEHAAA CHAAGGSGAA  360
AAAAAAQRPC SRGQPWQLPP LAPCAIVPPG LDTLCGLPPL AEEDWRRLRM RAPSWHASDV  420
AAGRPPYWYT LLIGEIWTHN ATHLLRDYDP SAASHLPSVA SQAALVTAMS RQQLSVSLVQ  480
SPAGACIASL FDGVADDEFI EWLLEDGGGG VTSMGAADEA ASFCSAAAAP QRPHPAAERG  540
SPALCSLDRP GGAASPRAAA PAARPQQPQP AGRLSPPAGA ASSGPALGPH TPPMAEDLAA  600
QSSADIAAWL GGWAWLGGGD AELPMRSGPP PPRTIRQRQP PRQPGAAAAA AVAAAPGRPP  660
AAAPAPGAPR LPAPAGSSGA GAGAPPLAPC HDAQPLGSKR SASRRQRGAS PARSGTKQAG  720
GTRSSGGESA HSAHAPPAPA HISGRLSSSQ LLQAQLDADS LLLRPSKSGP QLCCQVCGTD  780
LRSSRMFNMR FRVCPDHAAA ESVVVDGIQQ RFCQQCGRFH RVELFDASMR SCREQLAKHA  840
ERRRLRRRKQ WAAQQAAAAA AAVAAAVASG DVALPDPDPS HAASLASGQP FSAAAAAAAA  900
GSLTPSWLTA GGLGPAGGSL PLPTAGGSLP LAFSSGGATA PLLGSSGAGF GGGEGGGGYK  960
RRRGGGERGP VQLRPAASAG AGAVAHPRWQ QPPPRMLAQL GGESWQAQVA HLLEQQHSNT  1020
ALPAWPPLPA GLQQTLAAAG VGPSAHPSQQ HQQHQLHQHQ QGPAGELPHG TSTSALPPWQ  1080
PPPQQLALGP GGGGAAAPGH GGLTALEALE LQQSSSAFPP WQAAAAAGGH QNAGPGAAAA  1140
WRAQVDACLQ QLMQLVELMP RALVEAHLPA LLPVVMQLVG VLAPPGQQAP GQQAPPLLVL  1200
SVPKPELEAG GWQAQQAQQA AQQAQQAQQA AQQAQQAQQA AQQAQQAAQQ AQQAQQAAQQ  1260
EAQQQQQQQQ QAQQQPHFSV PGSYGAEPAP SWAGTEGEQA QQAQQQAQQQ APRTGGDSGS  1320
GAAAASQRSS GSQHGQLPPS WPSAPPLPAA AAVEPPGGGG GGAAVLLAAV AARAASSGGA  1380
PPPAAPQQPQ PQQQQQQQPP QLQQQHQGPS GSLGQLQAAA GARSEEGGLL GRRENGAFSP  1440
PAPAGSLGAP PPRPAASAPP PAAPALQPGS QPAASAPGAW PGAGGGSGGA PPGGLGGPGD  1500
ASLLPQQLLA ALGGGQLPAS LLQLPSLPAA QQGQLDVPRL LADCLSLLNS QPAAAPPPGD  1560
AQAALQQLLA GQGGLWGAQQ AQQQAQQHAQ QQAQQQAQQH AQQQAQQQAQ QHAQQHAQQA  1620
AQQAQQQAQQ QAQQHAQQQA SAQVLLSSLL QQPLAPQQAQ AQQAPQHAQH SHQQQQAQQA  1680
QQQQQQWGMD TLQHLLASVP LLQQPPPLPG QPQAPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-18	774	844	11	83	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	842	849	RRLRRRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843521.1	0.0	hypothetical protein CHLNCDRAFT_59250
TrEMBL	E1ZRY6	0.0	E1ZRY6_CHLVA; Uncharacterized protein
STRING	XP_005843521.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	3e-17	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Entrez Gene	17350823

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]