PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_240053
Common NameCHLNCDRAFT_58999
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB_related
Protein Properties Length: 1246aa    MW: 133224 Da    PI: 6.9859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_240053genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-1311011145347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                                   +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  estExt_fgenesh3_pg.C_240053 1101 PWTEEEHRLFLMGLAKYGKGDWRSISRNFVITRTPTQVASHAQKY 1145
                                   7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.102.0E-14101221IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.53E-41101431No hitNo description
SMARTSM0036934107130IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369350134158IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369220161185IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369250188212IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.101.8E-31241385IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369100320343IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036975347370IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520587.65E-11372523IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369130374398IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.105.7E-24386516IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369210401425IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369120428451IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369310456478IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.30.200.205.9E-20651731No hitNo description
PROSITE profilePS5001131.227670904IPR000719Protein kinase domain
PfamPF000699.0E-45674901IPR000719Protein kinase domain
SuperFamilySSF561126.04E-61675903IPR011009Protein kinase-like domain
PROSITE patternPS001070676698IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.7E-40732907No hitNo description
SMARTSM007171510081059IPR001005SANT/Myb domain
PROSITE profilePS5129418.83510941150IPR017930Myb domain
SuperFamilySSF466894.38E-1610951151IPR009057Homeodomain-like
SMARTSM007175.1E-1210981148IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.7E-1610981148IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-1110991144IPR009057Homeodomain-like
PfamPF002497.0E-1211011145IPR001005SANT/Myb domain
CDDcd001673.71E-1011011146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009556Biological Processmicrosporogenesis
GO:0010234Biological Processanther wall tapetum cell fate specification
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1246 aa     Download sequence    Send to blast
MVARWRNVLW LTLALALCSA VQGKGSPEKD RDILVKFRDS IKNWAVVKAG GNLQGWDDAT  60
PAYLWSGVVL DFELRVREVN LPCFDFMFCT VAQISAEAPV FAELAHLDHL ELLHLGGNNI  120
TGELPDAWAA LGTFPALQSL SLSSARLSGT LPRSWGAASA FPALKMLLLD QNQLRGSLPV  180
EWGAKGAFAS LEQLVLEDNS LSGALPVNWG QSPSFPRLQT LGLAGSGLGG SLPPGWGADG  240
GFSALQTLSL ARCGFQGALP PEWAAPSRFP KLNKIELQGN ELTGGLPSEW GCKHCFPALA  300
ELILLNNSLS GSLPDSWGML GALRMLDVSG NRLEGQLPGG WAVPGALPQL ATLSLGSNSL  360
GGTLPGAWGD PRALPALSWL DASHNNISGT LPGQWGAPNS FPRLRLLYLQ HNNLSGPLPS  420
NWSFNSTLQQ LFTLSLAHNH FTGNLPNAWG ATDNSLAALY ILDVGFNQLD GLLPANWGTS  480
RSALSSLTSI TIAGNNFTGE IPPNWGLLQD MHYLVLAPGN PTVCRPLPCV GQFVTCYGED  540
SATCQEPVQL RSNCSSDLPG WVPYAQQPRD APGLTGLQIG LIAAGASLVA ACGMLTAVLV  600
LRWQEARRWQ TVKGLDAELA LRGSTDPLAD LIAAAAARKR GRGQHSALAT KLLKECAIDH  660
KDVMFCRGPD GNLVQLGAGA YGQVYKAFLY GVHPVAVKVF QTQDDVPADD FWREISILRT  720
CRHGNIVQFQ GACVDGDTTM MVTELLDTDL YRALQLNRVN WYKHGLDIAI DVAQALHFLH  780
CRNIIHFDCK SPNILLSTTN SAKLADVGWA QILYHSYITG DGGTFNWAAP EQLIGLKCTA  840
KADVYSYGLV LWELCTRELP VRGQIRDIKV PQEAPQMAVD LVRECLDVDP AKRPTMEQII  900
HRLMEEKARM AAEADTTSGA SSSPSPSMGA AQPARAGSNS SLGLRGLDGL PGTSMHSSSG  960
SGSAFNAGTS SGHQSGHSVT LESTALTRSK QLDGMQAVRP ALLRGAPVDA VWSTEEDKVF  1020
ENALAQFWEH NDRLEKCASL LSRKDLPAVQ RRYLQLEEDL KAIDCGRVQL PNYPVPGEAL  1080
SVAQLQKKVK SQDTERRKGI PWTEEEHRLF LMGLAKYGKG DWRSISRNFV ITRTPTQVAS  1140
HAQKYFIRLN SQNKKDKRRA SIHDITTVAP TVGDHANGGA MGGGGSAPSF MSGVMSLTIT  1200
GQNSAVAAVV APGAPAPPGG IAMSAGLAMA CAAPSALPPG SMIPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gr8_A3e-335852632710Leucine-rich repeat receptor-like protein kinase PEPR1
5gr8_D3e-335852632710Leucine-rich repeat receptor-like protein kinase PEPR1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1636642ARKRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844178.10.0expressed protein
TrEMBLE1ZQ140.0E1ZQ14_CHLVA; Expressed protein
STRINGXP_005844178.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-48MYB family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]