PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh3_pg.C_20344 | ||||||||
Common Name | CHLNCDRAFT_56806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | NF-YC | ||||||||
Protein Properties | Length: 240aa MW: 25025 Da PI: 8.9325 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.3 | 3.8e-14 | 113 | 176 | 21 | 84 |
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +P +k+i+ +d++v+++sa+a ++ka elf+ +l+ r+ ha+ kr+ +k d+a + estExt_fgenesh3_pg.C_20344 113 FPTGVVKRIMMVDDEVQRVSADAVRAIAKATELFVQQLAARALQHAQAGKRKNFKEPDVAHVAG 176 78889******************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00398 | 1.6E-9 | 1 | 75 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 7.59E-13 | 1 | 70 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.52E-10 | 2 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.30.10 | 6.8E-14 | 2 | 72 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 13.141 | 2 | 75 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 2.9E-11 | 2 | 71 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47113 | 1.32E-13 | 112 | 176 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-12 | 113 | 173 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.4E-17 | 113 | 179 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPPRGQTAYF LFSEEHRAAA KADLAAQDGA KAGVAQVAKL VGAKWAALSD EEKQQYKDRA 60 AAKTRQMKEE AAAAAAAQGQ QQQSPGGEGA AAGEEPAPAA VGGGGAAPPP FGFPTGVVKR 120 IMMVDDEVQR VSADAVRAIA KATELFVQQL AARALQHAQA GKRKNFKEPD VAHVAGRDRR 180 LVDMGLREVL EQHGATSGGG GEEGENAAAQ KQRNAKRQMQ EEAAAGTRQI TAFFNLEAT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005851642.1 | 1e-167 | hypothetical protein CHLNCDRAFT_56806 | ||||
TrEMBL | E1Z3U0 | 1e-166 | E1Z3U0_CHLVA; Uncharacterized protein | ||||
STRING | XP_005851642.1 | 1e-167 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4674 | 11 | 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 17358396 |
Publications ? help Back to Top | |||
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