PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_130097

Common Name

CHLNCDRAFT_58166

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

MYB_related

Protein Properties

Length: 1134aa MW: 117430 Da PI: 8.5513

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_130097	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	7	53	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 W++ E l+++v+++G g+W +I + + +Rt+ q+k+++++ estExt_fgenesh3_pg.C_130097 7 HWSEAEVAALKEGVRRFGVGNWQKIVNDYPvlRHRTGVQLKDKYRNM 53 5********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.245	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-14	2	56	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-9	4	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-11	6	57	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-7	7	53	IPR001005	SANT/Myb domain
CDD	cd11660	2.53E-21	8	55	No hit	No description
Gene3D	G3DSA:3.30.40.10	3.3E-12	521	581	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	8.02E-13	523	584	IPR011011	Zinc finger, FYVE/PHD-type
SMART	SM00249	4.5E-5	534	581	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	6.6E-8	535	581	IPR019787	Zinc finger, PHD-finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence Send to blast
MGRSYNHWSE AEVAALKEGV RRFGVGNWQK IVNDYPVLRH RTGVQLKDKY RNMIKFRHLA 60 INEMGASPPQ QRRSSSSRAA AQRSPAPAAA EAAATADSQP QAASLPTQQQ AAGVARSAGA 120 SSAQRAKEQQ QPAAPPLTAQ QQQDQLAAEQ AATQQRLQQA QAAIKPVQHA YVQQLAAAAI 180 RRAAAAAAMD EAAAVAAPGA QADALQQVAQ WQQQQAELAQ QMLLAARQVY LQVAEEVQQA 240 QAAANAAVSA VLQAAETAAD SAPLSGMLPG TDAHVAATVV RHSNRRKAAL NRKRFLDEEG 300 GVEEPHSRPV SSQGGTTAAA SGVAQMDVEE MDGSRPPSAA GGKRRRVGAQ KRLHEDTRFG 360 ALPALKPCCG SAAGWLAAAL SAACSHVCAA SCRGSAGWLA LALMVSFSVS AFFLVGFAGI 420 YDDRRYRAGP AGSGSEAPLA HRRRTSSGGG SAPAHSDGGV RGRGGAARGG AALQRRRRRR 480 RQPHHLASEF GISDDDEDED FELDAELADA ELAEADEAEE EWQRQIKQEQ HDVDCLCGVS 540 YDDGEEMIEC EGCGVWAHIA CLARYGRLRH SADRYICSRC QGGFGSPMAA GTPTAAGALS 600 PRGVAVALGA RRQAFRNDSF NNDELYDIAA FLDNMGPHHR LKLQRSGSLG PGSARARSAS 660 AQQLAALGSM EAALGCSSPR AALPLGLPVP QWGGSRPRRP RNRRSGSDLG QHPWPSADVM 720 VPAPHTKRHR LPPPHPGTAA GAGLAGPLSG WHQMPSAVAA GLAAAHLSGL HQQSHMQPPP 780 HLPPFMPFGG PPPTLGAATR LSEQGLSPAA VAAAAAAAAA AAGMTLGRSW GQQPDTSSVA 840 EPAAHAQQEN QKAAAVAELM QIMQGAGSGL GLPPPPRPSL PAATASALLS SRQPTPSPPI 900 DLMHRDLHDV DLQDDLHAQD WLAAAASLAR ADSQPTYPAF PVGPLDGASG SHHLPSLGGS 960 PARPPSLSNA GVLPLPPPLA PMLGLQEQHQ HWMAVMSSLQ QQQQQQRVGA GRGEPAAAAA 1020 GAAAPHLRPS LALGLPPEPP FAAVEGLHGL TPSASARADS LMSGGKLGTA ASATAAISRM 1080 ARKSFERSPH GEILAAAAAA VGGAGGDQRA VVAAAGGASW DPPECWKNAP KTN*

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence Send to blast

MGRSYNHWSE AEVAALKEGV RRFGVGNWQK IVNDYPVLRH RTGVQLKDKY RNMIKFRHLA  60
INEMGASPPQ QRRSSSSRAA AQRSPAPAAA EAAATADSQP QAASLPTQQQ AAGVARSAGA  120
SSAQRAKEQQ QPAAPPLTAQ QQQDQLAAEQ AATQQRLQQA QAAIKPVQHA YVQQLAAAAI  180
RRAAAAAAMD EAAAVAAPGA QADALQQVAQ WQQQQAELAQ QMLLAARQVY LQVAEEVQQA  240
QAAANAAVSA VLQAAETAAD SAPLSGMLPG TDAHVAATVV RHSNRRKAAL NRKRFLDEEG  300
GVEEPHSRPV SSQGGTTAAA SGVAQMDVEE MDGSRPPSAA GGKRRRVGAQ KRLHEDTRFG  360
ALPALKPCCG SAAGWLAAAL SAACSHVCAA SCRGSAGWLA LALMVSFSVS AFFLVGFAGI  420
YDDRRYRAGP AGSGSEAPLA HRRRTSSGGG SAPAHSDGGV RGRGGAARGG AALQRRRRRR  480
RQPHHLASEF GISDDDEDED FELDAELADA ELAEADEAEE EWQRQIKQEQ HDVDCLCGVS  540
YDDGEEMIEC EGCGVWAHIA CLARYGRLRH SADRYICSRC QGGFGSPMAA GTPTAAGALS  600
PRGVAVALGA RRQAFRNDSF NNDELYDIAA FLDNMGPHHR LKLQRSGSLG PGSARARSAS  660
AQQLAALGSM EAALGCSSPR AALPLGLPVP QWGGSRPRRP RNRRSGSDLG QHPWPSADVM  720
VPAPHTKRHR LPPPHPGTAA GAGLAGPLSG WHQMPSAVAA GLAAAHLSGL HQQSHMQPPP  780
HLPPFMPFGG PPPTLGAATR LSEQGLSPAA VAAAAAAAAA AAGMTLGRSW GQQPDTSSVA  840
EPAAHAQQEN QKAAAVAELM QIMQGAGSGL GLPPPPRPSL PAATASALLS SRQPTPSPPI  900
DLMHRDLHDV DLQDDLHAQD WLAAAASLAR ADSQPTYPAF PVGPLDGASG SHHLPSLGGS  960
PARPPSLSNA GVLPLPPPLA PMLGLQEQHQ HWMAVMSSLQ QQQQQQRVGA GRGEPAAAAA  1020
GAAAPHLRPS LALGLPPEPP FAAVEGLHGL TPSASARADS LMSGGKLGTA ASATAAISRM  1080
ARKSFERSPH GEILAAAAAA VGGAGGDQRA VVAAAGGASW DPPECWKNAP KTN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	346	KRRRV
2	473	479	QRRRRRR
3	474	480	RRRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005846630.1	0.0	hypothetical protein CHLNCDRAFT_58166
TrEMBL	E1ZHV5	0.0	E1ZHV5_CHLVA; Uncharacterized protein
STRING	XP_005846630.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4131	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	2e-07	TRF-like 5

Link Out ? help Back to Top
Entrez Gene	17354066

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]