PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_130070

Common Name

CHLNCDRAFT_58151

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 2031aa MW: 210324 Da PI: 7.8256

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_130070	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	89.1	5e-28	130	207	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gCeadl yh+r k+C+vh ka + l +g++ rfCq+C++ h+l efD +k+sCr++L+khn+rrrk+q+ estExt_fgenesh3_pg.C_130070 130 ACQADGCEADLRAHTYYHQRNKICTVHIKADMFLRNGEQLRFCQRCGHAHALAEFDPGKHSCRKQLEKHNARRRKRQQ 207 5**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-23	125	192	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	24.606	128	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-25	130	209	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.7E-25	131	204	IPR004333	Transcription factor, SBP-box
Pfam	PF02485	2.0E-36	1637	1860	IPR003406	Glycosyl transferase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 2031 aa Download sequence Send to blast
MSWSEADWHW DPIAMTATAR QPAATASPAT GLPHRPPHPA GCSAAGSLQV EFLASLACVG 60 DGASKADAAD GMKPALPPAG TPGSSSGGTV AVEGAGGAAT AAGPARATPA RGRSDAKQKK 120 GAAGGGGNLA CQADGCEADL RAHTYYHQRN KICTVHIKAD MFLRNGEQLR FCQRCGHAHA 180 LAEFDPGKHS CRKQLEKHNA RRRKRQQDQA AAAAGLHGAT AGGGEAGGTV RRGRRQQAPK 240 RSRLRQDSSP EAEATAGSAD VAPSADAVEA FAAAWRSSAS WPSGGVQDES GSADEAGPAS 300 TSPRSASLQQ QLQQQQQQQR EQGQQAEASA DQLHAGPLPT HSGPDTSASA SAVATTLAPA 360 GPLGDMAGAA AAAGGAARPA SPPLPLLDFD IDLRPTPYEE LFQQQKPMHP AEAGLADDLA 420 AWLNRNLEED EQQQQQQQQQ QQQHAWQHAP GAAPAALPRP AAGAGPAWGM AAHQEGQPAS 480 LQLARGIMGQ QVMAPLDGLL PGYQQPLLHP HRHHHHHQLY GGTASSPAVS PMPAPVLGAA 540 LPLGAAAAGG SPPPHAPPLT SPTLATVSVK LFGCTPAELP MGLREHLKGW FDGAVHSLDG 600 YLRPGCVHLT AQAMLGGYAE ERLGRHETPP AEAAPGGVRA EQQEEHKSCC HRPTPAGVAA 660 PNPAGACCGR KRAAESPAEP AGAVGVASAV RRVVDRMLRS GEALWRTRTM LVQAGSHVAL 720 VHQGRLRQTW DIESASARAV PAILEALPPL LLASQPAALR VRGINMLQND CRLLLRLQGR 780 YVQPAAAMCT DCACSAPVHP GSSVGMAGQV AAVTAAASFE QRCCGCCVNK LQLAGLLPQA 840 ATATPAAVPP AAGLAVAEPP PGCCHSASPT AEAAAAGPPL DSATAAAAAP APAPGGCCGC 900 KEEQEPACQP PSRLQQQLGA RVLVVSSPAV HRELLQLVER HGPGALAPHL LDQARASAAR 960 RRHLGVVHEW VGRPEKMQYQ LVEATAARLL YWAVGSGLPA TADLLLSVLQ AQGGSSSAAA 1020 AAVLQRALRH EAAGGAAAAA LATMDGLSQL HLSMQATSAA AMQRAAELAC HDGLSLLHRA 1080 VESRCGATLR AVLGWGEDAG APWRCDLAGP MAITPLHLAA LLPDPAAARH AVLLLLSRCA 1140 PGARAWQCCC TVDGQTPADF YRAAGAARSS GGSSGAAEAT ATLEMEVAAL LHLQQAKAQR 1200 EHVPGVPLAA AAVPEPSPAP WLKVQAAVAE ALSLAPAQQQ AQPPAAAPGP ASVRPAAAAD 1260 PSGPEMQPST PRKNPGCLCA PGCPCALLDR CACCSSDSDE EGGPQEDGRH HQGTCGAGSG 1320 KCCCCSTDAS CHVVGCAGCA GAGHHGSGAP MPGSNAGGGG GLRRGVAASP SKAKACGDAP 1380 RSSTAAAAAP APTPQRRPVR RQRMQCVLLL HGTWLSALML LTLASIHGRQ HRGQLLAESL 1440 LDAVSEGGAR AAAGAAGAHR AFTAAHACGE ALQLPQVALL FLVKGPMHHE VLWRLWFESA 1500 AGLLPTDALA AALCSSNSSS GGNAASSSSS QPSAGERQRR VLQACSSRSG ADGGVEPVDG 1560 GVLSDSEGVT APQPGLAEEH EGQPLEEPAA SPSHSSRLLQ QAHSKHSATS NRAGTVNAGF 1620 VAPKGRAMPP ASGVLGEQIL FDVYVHPHPS FKGYPANSLF HGRELPRIER VATEWGQHSL 1680 VDAARALLKA AHRNPRNVKF VLMSESDLPL YSPHVLYTQL LGEPLSRLNA CNTTDGWRLF 1740 DHRWVPRMET KVLKPHHWRK SWQWFALGRR HVDLVLSDTA VDASFRAHCR TMFEQDRGAE 1800 RECYSDEHYI PTLLAVHGRD EETDCQGWLM DTDWSRVSNI SPHPWEYMPD ELTDKLLHQL 1860 RRPGQPRCGH AARVAVTARG AFVEAADLAG VSTAAAGSVQ ADAALTGMCR QLEQLAVRHR 1920 QEHQPLGPHC RLLARKFLNT TVAAALAAAA PCESMALVLN NGTCPGETPM QAALRRAWRR 1980 AAPYALLLLG TLLLPVLAAL CLGAVVVPAA VAVNGSRRGT RTDAACLRIH *

Sequence ? help Back to Top

Protein Sequence Length: 2031 aa Download sequence Send to blast

MSWSEADWHW DPIAMTATAR QPAATASPAT GLPHRPPHPA GCSAAGSLQV EFLASLACVG  60
DGASKADAAD GMKPALPPAG TPGSSSGGTV AVEGAGGAAT AAGPARATPA RGRSDAKQKK  120
GAAGGGGNLA CQADGCEADL RAHTYYHQRN KICTVHIKAD MFLRNGEQLR FCQRCGHAHA  180
LAEFDPGKHS CRKQLEKHNA RRRKRQQDQA AAAAGLHGAT AGGGEAGGTV RRGRRQQAPK  240
RSRLRQDSSP EAEATAGSAD VAPSADAVEA FAAAWRSSAS WPSGGVQDES GSADEAGPAS  300
TSPRSASLQQ QLQQQQQQQR EQGQQAEASA DQLHAGPLPT HSGPDTSASA SAVATTLAPA  360
GPLGDMAGAA AAAGGAARPA SPPLPLLDFD IDLRPTPYEE LFQQQKPMHP AEAGLADDLA  420
AWLNRNLEED EQQQQQQQQQ QQQHAWQHAP GAAPAALPRP AAGAGPAWGM AAHQEGQPAS  480
LQLARGIMGQ QVMAPLDGLL PGYQQPLLHP HRHHHHHQLY GGTASSPAVS PMPAPVLGAA  540
LPLGAAAAGG SPPPHAPPLT SPTLATVSVK LFGCTPAELP MGLREHLKGW FDGAVHSLDG  600
YLRPGCVHLT AQAMLGGYAE ERLGRHETPP AEAAPGGVRA EQQEEHKSCC HRPTPAGVAA  660
PNPAGACCGR KRAAESPAEP AGAVGVASAV RRVVDRMLRS GEALWRTRTM LVQAGSHVAL  720
VHQGRLRQTW DIESASARAV PAILEALPPL LLASQPAALR VRGINMLQND CRLLLRLQGR  780
YVQPAAAMCT DCACSAPVHP GSSVGMAGQV AAVTAAASFE QRCCGCCVNK LQLAGLLPQA  840
ATATPAAVPP AAGLAVAEPP PGCCHSASPT AEAAAAGPPL DSATAAAAAP APAPGGCCGC  900
KEEQEPACQP PSRLQQQLGA RVLVVSSPAV HRELLQLVER HGPGALAPHL LDQARASAAR  960
RRHLGVVHEW VGRPEKMQYQ LVEATAARLL YWAVGSGLPA TADLLLSVLQ AQGGSSSAAA  1020
AAVLQRALRH EAAGGAAAAA LATMDGLSQL HLSMQATSAA AMQRAAELAC HDGLSLLHRA  1080
VESRCGATLR AVLGWGEDAG APWRCDLAGP MAITPLHLAA LLPDPAAARH AVLLLLSRCA  1140
PGARAWQCCC TVDGQTPADF YRAAGAARSS GGSSGAAEAT ATLEMEVAAL LHLQQAKAQR  1200
EHVPGVPLAA AAVPEPSPAP WLKVQAAVAE ALSLAPAQQQ AQPPAAAPGP ASVRPAAAAD  1260
PSGPEMQPST PRKNPGCLCA PGCPCALLDR CACCSSDSDE EGGPQEDGRH HQGTCGAGSG  1320
KCCCCSTDAS CHVVGCAGCA GAGHHGSGAP MPGSNAGGGG GLRRGVAASP SKAKACGDAP  1380
RSSTAAAAAP APTPQRRPVR RQRMQCVLLL HGTWLSALML LTLASIHGRQ HRGQLLAESL  1440
LDAVSEGGAR AAAGAAGAHR AFTAAHACGE ALQLPQVALL FLVKGPMHHE VLWRLWFESA  1500
AGLLPTDALA AALCSSNSSS GGNAASSSSS QPSAGERQRR VLQACSSRSG ADGGVEPVDG  1560
GVLSDSEGVT APQPGLAEEH EGQPLEEPAA SPSHSSRLLQ QAHSKHSATS NRAGTVNAGF  1620
VAPKGRAMPP ASGVLGEQIL FDVYVHPHPS FKGYPANSLF HGRELPRIER VATEWGQHSL  1680
VDAARALLKA AHRNPRNVKF VLMSESDLPL YSPHVLYTQL LGEPLSRLNA CNTTDGWRLF  1740
DHRWVPRMET KVLKPHHWRK SWQWFALGRR HVDLVLSDTA VDASFRAHCR TMFEQDRGAE  1800
RECYSDEHYI PTLLAVHGRD EETDCQGWLM DTDWSRVSNI SPHPWEYMPD ELTDKLLHQL  1860
RRPGQPRCGH AARVAVTARG AFVEAADLAG VSTAAAGSVQ ADAALTGMCR QLEQLAVRHR  1920
QEHQPLGPHC RLLARKFLNT TVAAALAAAA PCESMALVLN NGTCPGETPM QAALRRAWRR  1980
AAPYALLLLG TLLLPVLAAL CLGAVVVPAA VAVNGSRRGT RTDAACLRIH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-18	121	204	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005846749.1	0.0	hypothetical protein CHLNCDRAFT_58151
TrEMBL	E1ZHQ5	0.0	E1ZHQ5_CHLVA; Uncharacterized protein
STRING	XP_005846749.1	0.0	(Chlorella variabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-17	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17353949

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]