PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_130036

Common Name

CHLNCDRAFT_58139

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 1224aa MW: 123614 Da PI: 6.8232

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_130036	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.8	5.2e-22	93	171	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC a+++ k ++r ++Ce+h+++ +v+ +sg+ rfCqqC+r+h++s+f+ +krsC L++ er++ +qa estExt_fgenesh3_pg.C_130036 93 VCQVEGCGANIEGGKPFYRLQRICEMHARSLAVTdASGRALRFCQQCTRMHSVSDFEGAKRSCVASLKRRAERKQAQQA 171 6**************************99998578999******************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-21	89	155	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.948	91	169	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.63E-20	92	172	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-23	94	168	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1224 aa Download sequence Send to blast
MASAWLASEF DWDPHALIAH PVPPSGHLPA SPSQGAHSPA AHQVSLPSAA ATATDLSNGS 60 ATEQAPGTAG SPPPRIEPSG GGKGRRRRGA AAVCQVEGCG ANIEGGKPFY RLQRICEMHA 120 RSLAVTDASG RALRFCQQCT RMHSVSDFEG AKRSCVASLK RRAERKQAQQ AERREEAAVD 180 PTAGKGARRK GGRGLAAGDA AAPGAATLSG SSGGGGGGSS DSRTTSGAAP PRSQHSGGSG 240 SGGGFPDGGS LNQPQQPQPP LQQHQQHQQL LSPPPASLAA FSPGAAGPQL PAETSPAASL 300 SALRLQQGAA AAQPWQGHLP AVGAAPPAPQ LVALPPPQQL GLGLGLQQVQ AQQGPGQQAS 360 LNALLTQHNL LAPGNYHHLP AAHELQAQQL LVPGAGLPPQ PVAAQPQHQQ HFAPAPAPAP 420 GPRFFAPAAP AGGQPGGAML APARTHDMVM CEAPSMPTLS PAELDMLLVL PGPARTMDPD 480 DMASALLART DAASCSQAAG PLPAGMPPVS LPATSSGAAY GGQGAFGAMP SGPHARGGPH 540 GQPGLAPQLA AWPAAGEAAD MLHAAAAPQL AQLPAAAGMP GDFAVVRISF KMYGLHPDQL 600 PPQLRQELQH ALLAAPTVLS GAVRAGCSHL TVNLLATSAE AAALQQPSGP AAALARLLHG 660 WQQQQQQQQG QGGEPQGRTW RLPAGLPLLR VVAQVESGGG AVLLAPVAEG RLVPGAAVLC 720 AVGPSSSSAL HQRLELSLSP ATPAATTVGQ AGGRFQLRCA DWQELALGAE PVAARRMLHC 780 RSRGRHATVA LLRPGGGAAA AERVAARTNG RVADVDEAGA AAEAEQQEED SEEEPEEEFE 840 SEGEEEEEEV QQLLLQQGAA EAWVPAAQRQ WGLYELELAS GPFLGGSVPV LVLPDELAGA 900 AAELQQLQHG EQAGRVLRLV SMVLEHEERQ REAAEAAARG PAAAAAARAA LAAAYPPAAL 960 ERLAGAARAL CALCVRCRWP ALLRRMLPAA AAASDAAAAV AAMDAMLPPV GLLGTAAAAG 1020 QAATLWALAD HAVALGHSWQ LACSSSGLTP LHLAAALGRG LSGDAASALV AALGPAAAAG 1080 CWRGARAGGW TPRQVATAAG CAALLDLLSA GEEAAGEAAG AGSSGGDALK PWKQKQQQQL 1140 AEEEQQLLQQ RLEGEPGKKA AAGSAAARRA SERAAGRLTL TAAELHACRQ RPLHPAVLLG 1200 VVGGAVCIVF GLAAALRLGL YDD*

Sequence ? help Back to Top

Protein Sequence Length: 1224 aa Download sequence Send to blast

MASAWLASEF DWDPHALIAH PVPPSGHLPA SPSQGAHSPA AHQVSLPSAA ATATDLSNGS  60
ATEQAPGTAG SPPPRIEPSG GGKGRRRRGA AAVCQVEGCG ANIEGGKPFY RLQRICEMHA  120
RSLAVTDASG RALRFCQQCT RMHSVSDFEG AKRSCVASLK RRAERKQAQQ AERREEAAVD  180
PTAGKGARRK GGRGLAAGDA AAPGAATLSG SSGGGGGGSS DSRTTSGAAP PRSQHSGGSG  240
SGGGFPDGGS LNQPQQPQPP LQQHQQHQQL LSPPPASLAA FSPGAAGPQL PAETSPAASL  300
SALRLQQGAA AAQPWQGHLP AVGAAPPAPQ LVALPPPQQL GLGLGLQQVQ AQQGPGQQAS  360
LNALLTQHNL LAPGNYHHLP AAHELQAQQL LVPGAGLPPQ PVAAQPQHQQ HFAPAPAPAP  420
GPRFFAPAAP AGGQPGGAML APARTHDMVM CEAPSMPTLS PAELDMLLVL PGPARTMDPD  480
DMASALLART DAASCSQAAG PLPAGMPPVS LPATSSGAAY GGQGAFGAMP SGPHARGGPH  540
GQPGLAPQLA AWPAAGEAAD MLHAAAAPQL AQLPAAAGMP GDFAVVRISF KMYGLHPDQL  600
PPQLRQELQH ALLAAPTVLS GAVRAGCSHL TVNLLATSAE AAALQQPSGP AAALARLLHG  660
WQQQQQQQQG QGGEPQGRTW RLPAGLPLLR VVAQVESGGG AVLLAPVAEG RLVPGAAVLC  720
AVGPSSSSAL HQRLELSLSP ATPAATTVGQ AGGRFQLRCA DWQELALGAE PVAARRMLHC  780
RSRGRHATVA LLRPGGGAAA AERVAARTNG RVADVDEAGA AAEAEQQEED SEEEPEEEFE  840
SEGEEEEEEV QQLLLQQGAA EAWVPAAQRQ WGLYELELAS GPFLGGSVPV LVLPDELAGA  900
AAELQQLQHG EQAGRVLRLV SMVLEHEERQ REAAEAAARG PAAAAAARAA LAAAYPPAAL  960
ERLAGAARAL CALCVRCRWP ALLRRMLPAA AAASDAAAAV AAMDAMLPPV GLLGTAAAAG  1020
QAATLWALAD HAVALGHSWQ LACSSSGLTP LHLAAALGRG LSGDAASALV AALGPAAAAG  1080
CWRGARAGGW TPRQVATAAG CAALLDLLSA GEEAAGEAAG AGSSGGDALK PWKQKQQQQL  1140
AEEEQQLLQQ RLEGEPGKKA AAGSAAARRA SERAAGRLTL TAAELHACRQ RPLHPAVLLG  1200
VVGGAVCIVF GLAAALRLGL YDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-13	79	167	2	83	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005846722.1	0.0	hypothetical protein CHLNCDRAFT_58139
TrEMBL	E1ZHK8	0.0	E1ZHK8_CHLVA; Uncharacterized protein
STRING	XP_005846722.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	2e-15	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Entrez Gene	17353947

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]