PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh3_pg.C_10363 | ||||||||
Common Name | CHLNCDRAFT_56603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 27545.2 Da PI: 12.0777 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.9e-10 | 102 | 151 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 +rWT +E l ++v+++G g+W+++ + gRt ++k++w+++ estExt_fgenesh3_pg.C_10363 102 QRWTSQEVAELQRLVAMHGEGQWALVLKQGRavfaAGRTSVDIKDKWRNL 151 8*****************************9*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 95 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.19 | 96 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.96E-12 | 98 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-7 | 100 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-9 | 101 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.78E-12 | 102 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 165 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.13 | 171 | 225 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.74E-10 | 173 | 224 | No hit | No description |
PROSITE profile | PS50090 | 5.668 | 174 | 223 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.76E-8 | 174 | 225 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDQGSPAKAA RARRQQAARG GPHQPAGQQP RVQEQPTPQK RRQTVPTPLA KLIRAEERLR 60 QREVKTERNK REAKARRSEE QEGRPPAAPP VTPQLKRRRQ TQRWTSQEVA ELQRLVAMHG 120 EGQWALVLKQ GRAVFAAGRT SVDIKDKWRN LNTPPRQREG DAGPSQKRGR VAIPWDSWEV 180 EELRRQVELH GGSNWLLVQD QGRGVFRDRR TAVDLKDKWR LLQRKAARAE RELQAAAPRA 240 * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005851924.1 | 1e-166 | hypothetical protein CHLNCDRAFT_56603 | ||||
TrEMBL | E1Z3D1 | 1e-165 | E1Z3D1_CHLVA; Uncharacterized protein | ||||
STRING | XP_005851924.1 | 1e-166 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6506 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 7e-09 | TRF-like 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 17359481 |
Publications ? help Back to Top | |||
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