PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_10164

Common Name

CHLNCDRAFT_56501

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

MYB_related

Protein Properties

Length: 417aa MW: 42720.1 Da PI: 10.4388

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_10164	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	42	86	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ eE++ ++++ k++G g+Wk I+r+ Rt+ q+ s+ qk+ estExt_fgenesh3_pg.C_10164 42 PWSDEEHKAFLNGLKMYGRGQWKQISRYYVPSRTPTQVASHAQKH 86 7*************************999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.473	35	91	IPR017930	Myb domain
SuperFamily	SSF46689	2.66E-16	35	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-14	38	89	IPR006447	Myb domain, plants
SMART	SM00717	4.9E-11	39	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-10	39	86	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-10	42	86	IPR001005	SANT/Myb domain
CDD	cd00167	1.99E-10	42	87	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MTLNPAGAGF ALPPALSLDL YKQQGAGSRP KHHVQPAKKG APWSDEEHKA FLNGLKMYGR 60 GQWKQISRYY VPSRTPTQVA SHAQKHFLRV SGTQKRRSRF SAVEEAAMTA AAAGPAQPPL 120 AALQHGMALP PPAPGVPGLF GSALGPGAAG AAAAVQPFQL LQQQARLPMA AGPLSAPGAV 180 RGGIAMGVPI GVLPPLPSIT TASGTELPIL PVMPGRINAM AASVVPPAPA ATTASYSADS 240 SGSELPASRP PSPAAPSLLP PPPGSDARAA LSSRTPSSSQ YAPSGRSQQL LRLLELNEQL 300 AADRASSGSG SAAAAAQLQP SGTSQSILSH HQHHQHHQHH QQQHPEASVR RVQSATAALD 360 TLASLAEAEA QSDEEARGGS VEPPATAAQQ QQQQQQQQLP APPPAHSPQA PLVSAF*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MTLNPAGAGF ALPPALSLDL YKQQGAGSRP KHHVQPAKKG APWSDEEHKA FLNGLKMYGR  60
GQWKQISRYY VPSRTPTQVA SHAQKHFLRV SGTQKRRSRF SAVEEAAMTA AAAGPAQPPL  120
AALQHGMALP PPAPGVPGLF GSALGPGAAG AAAAVQPFQL LQQQARLPMA AGPLSAPGAV  180
RGGIAMGVPI GVLPPLPSIT TASGTELPIL PVMPGRINAM AASVVPPAPA ATTASYSADS  240
SGSELPASRP PSPAAPSLLP PPPGSDARAA LSSRTPSSSQ YAPSGRSQQL LRLLELNEQL  300
AADRASSGSG SAAAAAQLQP SGTSQSILSH HQHHQHHQHH QQQHPEASVR RVQSATAALD  360
TLASLAEAEA QSDEEARGGS VEPPATAAQQ QQQQQQQQLP APPPAHSPQA PLVSAF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851769.1	0.0	hypothetical protein CHLNCDRAFT_56501
TrEMBL	E1Z2I5	0.0	E1Z2I5_CHLVA; Uncharacterized protein
STRING	XP_005851769.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP322	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-21	MYB family protein

Link Out ? help Back to Top
Entrez Gene	17359371

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]