PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1Plus.C_380072
Common NameCHLNCDRAFT_37677
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 330aa    MW: 34610 Da    PI: 9.3169
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1Plus.C_380072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.36.8e-26224296173
                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS
                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 
                                    +Cq +gC++dl+ +  y +r ++C  h ka + +v+g+  rfCq+C++ h l+ef+ +krsCr+ L++hn+rr
  estExt_Genewise1Plus.C_380072 224 TCQSDGCTVDLAPLSFYLQRNHICPDHLKADSYMVKGVPSRFCQRCGQGHPLTEFEGSKRSCRKALERHNQRR 296
                                    6***********************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114121.315222299IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.4E-22222286IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-22224296IPR004333Transcription factor, SBP-box
PfamPF031103.3E-27225296IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGENLEALLN SWASSPTAGR LRPSEDGLEA GHDFLGDFNM ELLLAPSPPP PPAAAPPPVE  60
DSTGSGTAGG APQSSAPMSA PPAASPAGPG GSGLGAALGH QQQAALGQQQ GAQVHAHHSL  120
HHAMPAYMRP LTASGSAPLP PLDPSAAAQL GGPQPMMLQL PPNGSGMQHY MAPPRNYHQP  180
GTGPPLVLPA LTAVPAGSSQ QPSESNLDGK RRRGPRPRVF KKHTCQSDGC TVDLAPLSFY  240
LQRNHICPDH LKADSYMVKG VPSRFCQRCG QGHPLTEFEG SKRSCRKALE RHNQRRWGGA  300
LRREGKPWGS WARAVRFWQL WSAGSGADG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-162252961182squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005842938.10.0hypothetical protein CHLNCDRAFT_37677
TrEMBLE1ZTM80.0E1ZTM8_CHLVA; Uncharacterized protein
STRINGXP_005842938.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-18squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]