PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genewise1Plus.C_380072 | ||||||||
Common Name | CHLNCDRAFT_37677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 330aa MW: 34610 Da PI: 9.3169 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 82.3 | 6.8e-26 | 224 | 296 | 1 | 73 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +Cq +gC++dl+ + y +r ++C h ka + +v+g+ rfCq+C++ h l+ef+ +krsCr+ L++hn+rr estExt_Genewise1Plus.C_380072 224 TCQSDGCTVDLAPLSFYLQRNHICPDHLKADSYMVKGVPSRFCQRCGQGHPLTEFEGSKRSCRKALERHNQRR 296 6***********************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 21.315 | 222 | 299 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.4E-22 | 222 | 286 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-22 | 224 | 296 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-27 | 225 | 296 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGENLEALLN SWASSPTAGR LRPSEDGLEA GHDFLGDFNM ELLLAPSPPP PPAAAPPPVE 60 DSTGSGTAGG APQSSAPMSA PPAASPAGPG GSGLGAALGH QQQAALGQQQ GAQVHAHHSL 120 HHAMPAYMRP LTASGSAPLP PLDPSAAAQL GGPQPMMLQL PPNGSGMQHY MAPPRNYHQP 180 GTGPPLVLPA LTAVPAGSSQ QPSESNLDGK RRRGPRPRVF KKHTCQSDGC TVDLAPLSFY 240 LQRNHICPDH LKADSYMVKG VPSRFCQRCG QGHPLTEFEG SKRSCRKALE RHNQRRWGGA 300 LRREGKPWGS WARAVRFWQL WSAGSGADG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-16 | 225 | 296 | 11 | 82 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005842938.1 | 0.0 | hypothetical protein CHLNCDRAFT_37677 | ||||
TrEMBL | E1ZTM8 | 0.0 | E1ZTM8_CHLVA; Uncharacterized protein | ||||
STRING | XP_005842938.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-18 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 17350295 |
Publications ? help Back to Top | |||
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