PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1.C_90203
Common NameCHLNCDRAFT_30989
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family ARR-B
Protein Properties Length: 334aa    MW: 35838.7 Da    PI: 6.5649
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1.C_90203genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.14.8e-29201254155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ e+H++Fv+av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  estExt_Genewise1.C_90203 201 KPRVVWSVEMHQQFVDAVNQL-GVDKAVPKRILDLMNVEGLTRENVASHLQKYRL 254
                               79*******************.********************************8 PP
2Response_reg83.56.5e-28361471109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                               vl+vdD+p  ++++  +l++ +y ev++ ++g++al ll++++     +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++++
  estExt_Genewise1.C_90203  36 VLVVDDDPMCLKVVSAMLQRCNY-EVDTRTSGQDALLLLRDRQehnhqFDLVLSDVYMPDMDGFKLLEHIGLEL-DLPVIMMSSN 118
                               89*********************.***************544444566**********************5544.6********* PP

                               TTHHHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                               g+ + +l+ +  Ga dfl Kp+  eel++
  estExt_Genewise1.C_90203 119 GDTDVVLRGVTHGAVDFLIKPVRVEELRN 147
                               **************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.05E-3832161IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-4133185No hitNo description
SMARTSM004481.6E-3134149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94835153IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.6E-2536147IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.02E-3037152No hitNo description
PROSITE profilePS5129410.854198257IPR017930Myb domain
SuperFamilySSF466897.7E-20199258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30199258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24201254IPR006447Myb domain, plants
PfamPF002498.3E-7203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDLAGEGSSG DNTNNAAASS SGATDCGLFS PSGLKVLVVD DDPMCLKVVS AMLQRCNYEV  60
DTRTSGQDAL LLLRDRQEHN HQFDLVLSDV YMPDMDGFKL LEHIGLELDL PVIMMSSNGD  120
TDVVLRGVTH GAVDFLIKPV RVEELRNVWQ HVVRRRSLHV GRASDEHSGL DLEQHQHHHG  180
VKRKEVEALQ VQHETQGANK KPRVVWSVEM HQQFVDAVNQ LGVDKAVPKR ILDLMNVEGL  240
TRENVASHLQ KYRLYLKRAQ GLQSGKGSKG HKAAQEAAML DPQAAAAAAA VAAGAGPSSV  300
FAQVAAQQAA MGGGAGLGQP GMAQAGMPVM GMPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23198258262ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848101.10.0hypothetical protein CHLNCDRAFT_30989, partial
SwissprotQ9ZWJ92e-90ARR2_ARATH; Two-component response regulator ARR2
TrEMBLE1ZEB20.0E1ZEB2_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005848101.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-86response regulator 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]