PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.2.707.1 | ||||||||
Common Name | CHLNCDRAFT_19177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 57aa MW: 6742.76 Da PI: 9.5749 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 68.5 | 1.4e-21 | 1 | 57 | 19 | 75 |
HHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 19 rrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +r++vCe+ + a++vl +g+ qrfCqqC+rfh ls fD + r+Cr++La+h + +rk e_gw1.2.707.1 1 QRYRVCEKDALAEAVLQDGQLQRFCQQCGRFHPLSFFDATMRTCREQLARHASLKRK 57 69*************************************************998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 19.016 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 8.8E-18 | 1 | 45 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-20 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-18 | 1 | 57 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
QRYRVCEKDA LAEAVLQDGQ LQRFCQQCGR FHPLSFFDAT MRTCREQLAR HASLKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005851469.1 | 8e-35 | hypothetical protein CHLNCDRAFT_19177, partial | ||||
Swissprot | Q38740 | 2e-14 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | E1Z4L6 | 2e-33 | E1Z4L6_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005851469.1 | 3e-34 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 3e-15 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Entrez Gene | 17358528 |
Publications ? help Back to Top | |||
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