PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_9_00430

Common Name

CHLNCDRAFT_145623

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 357aa MW: 37704.6 Da PI: 8.036

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_9_00430	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	77.8	1.7e-24	31	102	6	77
T-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 6 gCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C+ l +a+ +h+r++vC h+ a +v+++g+ qrfCqqC+rfhel+ f + rsCr++La+h errr+++ IGS.gm_9_00430 31 VCQCSLRDARVFHQRYHVCPEHATADQVVLHGVLQRFCQQCGRFHELERFAPSMRSCRQQLARHAERRRHRR 102 48889***************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.2E-20	24	88	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.726	26	101	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-21	28	101	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-23	31	100	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MQQEGLAALQ LGALDAPRPY QSARKGPACA VCQCSLRDAR VFHQRYHVCP EHATADQVVL 60 HGVLQRFCQQ CGRFHELERF APSMRSCRQQ LARHAERRRH RRAVAAAAKA AARTAPPSGA 120 HLSAPGGAVM PAPPTAAAPG SGLPLPDAKR PRLEGPEAQL AALLQQQAAA AGVKLEQADA 180 GGTGSGRQQD GSCASVQSTH STHINNTADG LDALLAAAQE EEQEVGQQAR AAAAATKPAK 240 PAAAAWPPAA APPPAPPPPP PQWAPTAPAL PPLPLPETWQ PAQPAWQQQQ WDQPRFPPAW 300 EAPPALAQAQ AQAQAGWELP HFPPAWEVPQ TIPLYLPAFR VTYAYSGPEA VMWQDG*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MQQEGLAALQ LGALDAPRPY QSARKGPACA VCQCSLRDAR VFHQRYHVCP EHATADQVVL  60
HGVLQRFCQQ CGRFHELERF APSMRSCRQQ LARHAERRRH RRAVAAAAKA AARTAPPSGA  120
HLSAPGGAVM PAPPTAAAPG SGLPLPDAKR PRLEGPEAQL AALLQQQAAA AGVKLEQADA  180
GGTGSGRQQD GSCASVQSTH STHINNTADG LDALLAAAQE EEQEVGQQAR AAAAATKPAK  240
PAAAAWPPAA APPPAPPPPP PQWAPTAPAL PPLPLPETWQ PAQPAWQQQQ WDQPRFPPAW  300
EAPPALAQAQ AQAQAGWELP HFPPAWEVPQ TIPLYLPAFR VTYAYSGPEA VMWQDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-20	32	99	16	83	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848195.1	0.0	hypothetical protein CHLNCDRAFT_145623
TrEMBL	E1ZDV6	0.0	E1ZDV6_CHLVA; Uncharacterized protein
STRING	XP_005848195.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	6e-16	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Entrez Gene	17355241

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]