PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_9_00281

Common Name

CHLNCDRAFT_145474

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 389aa MW: 40530.7 Da PI: 7.3944

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_9_00281	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	28.7	2.7e-09	254	291	12	48
RWP-RK 12 kyFslpikdAAkeLgv.clTvLKriCRqyGIkRWPhRk 48 +F+++ + AA++Lg ++T+LK++ ++GIk WP Rk IGS.gm_9_00281 254 GCFDMTQARAARHLGFsSPTTLKKAMSRLGIKQWPNRK 291 47***********7369****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.991	219	315	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-9	254	293	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MQPHALMLLG AAELLSLNYD PCAAAAGPWV PYSSYPGNTA YLPVCHDTVV PLSDGVDDPQ 60 PTAAATSALL ASRGGPIKCD WLQQLPAAAA TGIAGSAASW PAGGGQHSSG MPEPAASLDT 120 ASNLTQAACP CTSNTSSGSD GSSASACAAA ANLGGLAAAA VAGLQLGPAP QQQQHAQQVQ 180 AEEGPPDAAP PPQPATSRGS SGSRGSGRSP AECGAGLGPR GGVQKKQRQE AAGAPMARKY 240 WECELTIEIL EEHGCFDMTQ ARAARHLGFS SPTTLKKAMS RLGIKQWPNR KRSTVRGMIA 300 GLECYLPQYS GPPARVAAVL EGVRREMAPF LRSHTGSIDL PQEVTAWRQV VYKLKNEEKD 360 TEKKEKMRPE VERLMQTLEE RFAPSWGS*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MQPHALMLLG AAELLSLNYD PCAAAAGPWV PYSSYPGNTA YLPVCHDTVV PLSDGVDDPQ  60
PTAAATSALL ASRGGPIKCD WLQQLPAAAA TGIAGSAASW PAGGGQHSSG MPEPAASLDT  120
ASNLTQAACP CTSNTSSGSD GSSASACAAA ANLGGLAAAA VAGLQLGPAP QQQQHAQQVQ  180
AEEGPPDAAP PPQPATSRGS SGSRGSGRSP AECGAGLGPR GGVQKKQRQE AAGAPMARKY  240
WECELTIEIL EEHGCFDMTQ ARAARHLGFS SPTTLKKAMS RLGIKQWPNR KRSTVRGMIA  300
GLECYLPQYS GPPARVAAVL EGVRREMAPF LRSHTGSIDL PQEVTAWRQV VYKLKNEEKD  360
TEKKEKMRPE VERLMQTLEE RFAPSWGS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848137.1	0.0	hypothetical protein CHLNCDRAFT_145474
TrEMBL	E1ZDK0	0.0	E1ZDK0_CHLVA; Uncharacterized protein
STRING	XP_005848137.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Link Out ? help Back to Top
Entrez Gene	17355413

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]