PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_9_00103

Common Name

CHLNCDRAFT_145296

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 473aa MW: 50616.6 Da PI: 6.7979

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_9_00103	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.6	9.5e-07	119	165	11	57
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +kNR A++r+R+R ka+++ e + +++e ++L+ e+++lk+ IGS.gm_9_00103 119 EKNRRAQKRFRERQKAKMKDMGEQLEDMSSELSKLRVENNSLKNRNT 165 79*****************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14686	1.54E-9	118	164	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-6	118	171	No hit	No description
SuperFamily	SSF57959	5.71E-8	118	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MAALQPEGAV DMNWLPGDAG GLDLDGLQNY FGQAQPGALS DPLLMQAQIP YRNAMPGGFP 60 APPPSANLFS SIVLPDGLNQ MGGGGGGGGG GDDSGDSSGG AHAGGGKKSA EQRAAAVQEK 120 NRRAQKRFRE RQKAKMKDMG EQLEDMSSEL SKLRVENNSL KNRNTILEKV LALRDEHIRM 180 LQDEQQVFDL GNHYLQSSNQ KLLTGGASGA GALTLGTTAG PLTTSEIKAV KGMPSDVVIG 240 RWKETVRELG NILVQIEGCP DSNDTRHQAA MNALCQVLDS AGQLCMHTAV LHPTNMQKLI 300 AATLDDGRSG VTAEDRTRWA AVTQSLQLSH DQRAQIVSLR AIFLRRMTKV MEERRGILAK 360 LQMVNIPDRM MALQSVISET LKVNECTSEL KANLQEEHLA GMEFIGTVFK TILSPLQKAR 420 AIVQSYPFYP DVYQIATVLA LEKGGPAALE SLEAATAAAA GNPITIPTAY KH*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MAALQPEGAV DMNWLPGDAG GLDLDGLQNY FGQAQPGALS DPLLMQAQIP YRNAMPGGFP  60
APPPSANLFS SIVLPDGLNQ MGGGGGGGGG GDDSGDSSGG AHAGGGKKSA EQRAAAVQEK  120
NRRAQKRFRE RQKAKMKDMG EQLEDMSSEL SKLRVENNSL KNRNTILEKV LALRDEHIRM  180
LQDEQQVFDL GNHYLQSSNQ KLLTGGASGA GALTLGTTAG PLTTSEIKAV KGMPSDVVIG  240
RWKETVRELG NILVQIEGCP DSNDTRHQAA MNALCQVLDS AGQLCMHTAV LHPTNMQKLI  300
AATLDDGRSG VTAEDRTRWA AVTQSLQLSH DQRAQIVSLR AIFLRRMTKV MEERRGILAK  360
LQMVNIPDRM MALQSVISET LKVNECTSEL KANLQEEHLA GMEFIGTVFK TILSPLQKAR  420
AIVQSYPFYP DVYQIATVLA LEKGGPAALE SLEAATAAAA GNPITIPTAY KH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847908.1	0.0	hypothetical protein CHLNCDRAFT_145296
TrEMBL	E1ZE47	0.0	E1ZE47_CHLVA; Uncharacterized protein
STRING	XP_005847908.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1904	6	6

Link Out ? help Back to Top
Entrez Gene	17355202

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]