PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_8_00029 | ||||||||
Common Name | CHLNCDRAFT_144701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 561aa MW: 57002.4 Da PI: 8.5349 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 31.8 | 3.8e-10 | 4 | 71 | 12 | 74 |
TT--HHHHHTT....--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 12 seakeyhrrhk....vCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +++++y+ r + e h++a++v +g rfCqqC++ +s f+ krsC L k +r r IGS.gm_8_00029 4 ANLRSYFLRQDlwcvIGEEHARAAAVPdGRGDFLRFCQQCTKLEPVSAFEGPKRSCHASLIKRHDRHR 71 6667777665421114578999998873567889***********************99865444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 9.981 | 1 | 73 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-13 | 19 | 71 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-8 | 19 | 60 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-7 | 32 | 72 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MVLANLRSYF LRQDLWCVIG EEHARAAAVP DGRGDFLRFC QQCTKLEPVS AFEGPKRSCH 60 ASLIKRHDRH RLRGKRDSGD SQPARSLRRR ADQAHPWAGG DGSSGGGRGS ASPGSTASQQ 120 LASTSAPPRQ QQQQPLQPPP LPLSILQALG SQQQQLLRPV AHHAAAAPSP GLGAAASGSG 180 TLPDLDQLLS RLSSGAPAPS PPPQSQSMFA AFGGGGGGGA GLLQQQMGPL LEALRAASAA 240 GGSPMPTPPA ATPQPQAAAL LQALVPPHGA AGELRDLLQL LRLLQAQQAA VCARLEEMAG 300 GGGVPQHQLA ELGAAMAPSA HLEQRLRLPL MQLLAQGQAQ QAAGGEATAG GGTGAPPPPL 360 PQPLPPPSVQ ASVPLPAGGD GERQQLALRQ LSGQLPGQAL PSLPDGGQAG AQQQHLGSLL 420 QAQVQQAMQA AGLGPQLLGL AAAQAGMGQW AFSPADAAAM LAAAVGGAGG AGAGAPSAPP 480 AVPKAEPAAA PPLGAAAGAT PAEEQLRALL GRLTGTLMPP PQQQQPPPLQ LLQQQQEQHQ 540 QQEQLQQQLH QQQQMQQQPQ * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005848208.1 | 0.0 | expressed protein | ||||
TrEMBL | E1ZCU4 | 0.0 | E1ZCU4_CHLVA; Expressed protein | ||||
STRING | XP_005848208.1 | 0.0 | (Chlorella variabilis) |
Link Out ? help Back to Top | |
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Entrez Gene | 17355779 |
Publications ? help Back to Top | |||
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