PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_8_00029
Common NameCHLNCDRAFT_144701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 561aa    MW: 57002.4 Da    PI: 8.5349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_8_00029genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP31.83.8e-104711274
                    TT--HHHHHTT....--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS
             SBP 12 seakeyhrrhk....vCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74
                    +++++y+ r      + e h++a++v   +g   rfCqqC++   +s f+  krsC   L k  +r r
  IGS.gm_8_00029  4 ANLRSYFLRQDlwcvIGEEHARAAAVPdGRGDFLRFCQQCTKLEPVSAFEGPKRSCHASLIKRHDRHR 71
                    6667777665421114578999998873567889***********************99865444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511419.981173IPR004333Transcription factor, SBP-box
PfamPF031101.0E-131971IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.4E-81960IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-73272IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVLANLRSYF LRQDLWCVIG EEHARAAAVP DGRGDFLRFC QQCTKLEPVS AFEGPKRSCH  60
ASLIKRHDRH RLRGKRDSGD SQPARSLRRR ADQAHPWAGG DGSSGGGRGS ASPGSTASQQ  120
LASTSAPPRQ QQQQPLQPPP LPLSILQALG SQQQQLLRPV AHHAAAAPSP GLGAAASGSG  180
TLPDLDQLLS RLSSGAPAPS PPPQSQSMFA AFGGGGGGGA GLLQQQMGPL LEALRAASAA  240
GGSPMPTPPA ATPQPQAAAL LQALVPPHGA AGELRDLLQL LRLLQAQQAA VCARLEEMAG  300
GGGVPQHQLA ELGAAMAPSA HLEQRLRLPL MQLLAQGQAQ QAAGGEATAG GGTGAPPPPL  360
PQPLPPPSVQ ASVPLPAGGD GERQQLALRQ LSGQLPGQAL PSLPDGGQAG AQQQHLGSLL  420
QAQVQQAMQA AGLGPQLLGL AAAQAGMGQW AFSPADAAAM LAAAVGGAGG AGAGAPSAPP  480
AVPKAEPAAA PPLGAAAGAT PAEEQLRALL GRLTGTLMPP PQQQQPPPLQ LLQQQQEQHQ  540
QQEQLQQQLH QQQQMQQQPQ *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848208.10.0expressed protein
TrEMBLE1ZCU40.0E1ZCU4_CHLVA; Expressed protein
STRINGXP_005848208.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]