PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_6_00180

Common Name

CHLNCDRAFT_143606

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 1286aa MW: 127730 Da PI: 10.3851

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_6_00180	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.4	3.3e-19	34	82	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ei+ e+l++ F+lp ++AA+ + v+lTvLK+ R++G+ RWP+Rk+ksl IGS.gm_6_00180 34 EITREELAQWFHLPAEEAARVMRVSLTVLKQVARRHGVLRWPYRKVKSL 82 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.438	18	102	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-18	35	82	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1286 aa Download sequence Send to blast
MEGQEGPFLE PEHGAGKQKQ TRRKKSRMGR LPSEITREEL AQWFHLPAEE AARVMRVSLT 60 VLKQVARRHG VLRWPYRKVK SLSRALSQPA GSTPSTPRGS QPGGTPLSST LSEPVGMMQP 120 AVSGQQRGGM SPSHSALLLD QQVAAAAAAA AAHHLAGTAS GSPRMPPRQP SGLRLAMEMS 180 SSSLPYFPPL GAQQAQQAQQ AAQQAAQAPP LPPSLSASHL QSLMQQAQAL AMPPHWSQPA 240 QRQRQQQQQP QPPSPHADGG GGGGYPGPWR PAPTPSGNSQ ASRLWSEAAA AVVVAGHQQQ 300 QQQQQQQQAQ AFQQPQGQPG HASVPSSPAV PRLVSLHRPT AQQWQPWHAL PAQQQAPLPS 360 AAAPPPPQAP PPQARGAEAA AAAPAPASAA TADGHPPADS ANLTPTSADT RGIEVLLSAI 420 DKEQQHERQL SQQLTDAGVG SAPAPAAAAA SDRAVAVSEE VAAPPRPCAE VAQHAQQAQE 480 AQAAAAAPAG PQQEPQQGEP QPAVGGEAEA AAAAAAARQL NRISSDGGSA GSSSDPPHPA 540 SRQADAAAAV AAVAAAPAPG AGAPPSPAAA EAEATTSRPA STDGQPAAAA EPPPLRLGSG 600 AFRPLAPAPQ PDPPPRPSSP PAAGPRPAAA AAPEGGADTW RAAGAAAAAA QLPASPTAAA 660 AAAAGDMWAA AAAAAAAAAA AGAAGGRPAA LRRPSPFTSR RASPGPPASP ATSQHGKGPF 720 GLELSLQDLL AQQKAEAAAA GAGGGAGEPP TAGLPRRASL SKEGMERLPT FEWGGGKSRS 780 PSPRLASPPD FTFGPAPGGG GGGGGGGGGG GGGGGGGGGG GGGFGGGGAL AREAAPAELA 840 GASPGALSVR LATAVGAKRP AAAASWEAVA GAGGGAATGG SPTKRAHLAA GAAAADAEAA 900 LQPQRSRQLS CQLSGSLPSG QLSGQLSSQQ QSADTPRHRQ SGANLGLGSL GLGSGSLGLA 960 SGSLGPLGSG SLGLGSGSLG PLGSGGQLGG ASDGGSGELS LPAIMALLRG AAGVQPLQDQ 1020 AWESERQQLL ALVLAGGGGG GGLEALLRSA SWERQQQAAA AQTSLLGAAA SLPPSLFGQL 1080 LGSRPSPRGS QGGSAFNAFH PSHSAPAAIF AAAGQQGQAP RGAGQQQGPP PQLQQLAVAQ 1140 QQQAQQQAQQ QAAMKAAVPV IPEQVALFCL QKYAKKLGYS IDTIALQQAQ QEAAAQQAAA 1200 QQAQQAQHAL LMQQAQQEAA LLQQQAQQEQ ALLMQHAAAQ EQALRLQQHA HAKQHQHQHQ 1260 QQAQAAQRHQ HHHQAPNPPP PPPHG*

Sequence ? help Back to Top

Protein Sequence Length: 1286 aa Download sequence Send to blast

MEGQEGPFLE PEHGAGKQKQ TRRKKSRMGR LPSEITREEL AQWFHLPAEE AARVMRVSLT  60
VLKQVARRHG VLRWPYRKVK SLSRALSQPA GSTPSTPRGS QPGGTPLSST LSEPVGMMQP  120
AVSGQQRGGM SPSHSALLLD QQVAAAAAAA AAHHLAGTAS GSPRMPPRQP SGLRLAMEMS  180
SSSLPYFPPL GAQQAQQAQQ AAQQAAQAPP LPPSLSASHL QSLMQQAQAL AMPPHWSQPA  240
QRQRQQQQQP QPPSPHADGG GGGGYPGPWR PAPTPSGNSQ ASRLWSEAAA AVVVAGHQQQ  300
QQQQQQQQAQ AFQQPQGQPG HASVPSSPAV PRLVSLHRPT AQQWQPWHAL PAQQQAPLPS  360
AAAPPPPQAP PPQARGAEAA AAAPAPASAA TADGHPPADS ANLTPTSADT RGIEVLLSAI  420
DKEQQHERQL SQQLTDAGVG SAPAPAAAAA SDRAVAVSEE VAAPPRPCAE VAQHAQQAQE  480
AQAAAAAPAG PQQEPQQGEP QPAVGGEAEA AAAAAAARQL NRISSDGGSA GSSSDPPHPA  540
SRQADAAAAV AAVAAAPAPG AGAPPSPAAA EAEATTSRPA STDGQPAAAA EPPPLRLGSG  600
AFRPLAPAPQ PDPPPRPSSP PAAGPRPAAA AAPEGGADTW RAAGAAAAAA QLPASPTAAA  660
AAAAGDMWAA AAAAAAAAAA AGAAGGRPAA LRRPSPFTSR RASPGPPASP ATSQHGKGPF  720
GLELSLQDLL AQQKAEAAAA GAGGGAGEPP TAGLPRRASL SKEGMERLPT FEWGGGKSRS  780
PSPRLASPPD FTFGPAPGGG GGGGGGGGGG GGGGGGGGGG GGGFGGGGAL AREAAPAELA  840
GASPGALSVR LATAVGAKRP AAAASWEAVA GAGGGAATGG SPTKRAHLAA GAAAADAEAA  900
LQPQRSRQLS CQLSGSLPSG QLSGQLSSQQ QSADTPRHRQ SGANLGLGSL GLGSGSLGLA  960
SGSLGPLGSG SLGLGSGSLG PLGSGGQLGG ASDGGSGELS LPAIMALLRG AAGVQPLQDQ  1020
AWESERQQLL ALVLAGGGGG GGLEALLRSA SWERQQQAAA AQTSLLGAAA SLPPSLFGQL  1080
LGSRPSPRGS QGGSAFNAFH PSHSAPAAIF AAAGQQGQAP RGAGQQQGPP PQLQQLAVAQ  1140
QQQAQQQAQQ QAAMKAAVPV IPEQVALFCL QKYAKKLGYS IDTIALQQAQ QEAAAQQAAA  1200
QQAQQAQHAL LMQQAQQEAA LLQQQAQQEQ ALLMQHAAAQ EQALRLQQHA HAKQHQHQHQ  1260
QQAQAAQRHQ HHHQAPNPPP PPPHG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849297.1	0.0	hypothetical protein CHLNCDRAFT_143606
TrEMBL	E1ZA34	0.0	E1ZA34_CHLVA; Uncharacterized protein
STRING	XP_005849297.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17356626

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]