PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_6_00065

Common Name

CHLNCDRAFT_143491

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 326aa MW: 35120 Da PI: 8.785

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_6_00065	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.7	5.7e-22	46	118	5	77
TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 ++C a l+ k++++r++ Ce+++ +++v+ g+ qrfCqqC+rfh + f+ r+Cr++La+h er+r ++ IGS.gm_6_00065 46 QQCGAGLAGHKRFYQRYRACETCALSAAVVRGGELQRFCQQCGRFHPVARFNGLMRTCREQLARHAERQRLRR 118 69******************************************************************88554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	19.076	40	117	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.5E-18	44	104	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-19	45	119	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-22	46	115	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MQCELQDDHV EAAQGLAALA CFPPGGGGGA AALPGSHGRG HGGTCQQCGA GLAGHKRFYQ 60 RYRACETCAL SAAVVRGGEL QRFCQQCGRF HPVARFNGLM RTCREQLARH AERQRLRRQQ 120 RREWAAAAAA GGAPTMTEEP PTGSDGSPAP GRASAGKAAR QPPRHHRRQP SAGPEEAAAE 180 EEEQRDSRAQ EEATQQRQLR QLLLQAAARF ESPAGASPAP QLPLPPLTPR PLQQQQHHAC 240 GEQAQQTDGW QAWEWAAHPR QQRQQQAAAA PPAQAHPCPT DGSGAATLGD YQAFWLHRLS 300 ALLVSLNQDQ AKREAAAVRR QGWVY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849248.1	0.0	hypothetical protein CHLNCDRAFT_143491
TrEMBL	E1ZB12	0.0	E1ZB12_CHLVA; Uncharacterized protein
STRING	XP_005849248.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-10	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Entrez Gene	17356509

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]